RNA id: TCONS_00071465


Basic Information

Item Value
RNA id TCONS_00071465
length 4745
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_036585
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 34749288 ~ 34762163 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aactgctTGAGACAGTCACATTATAGGACAGTTTTGAGATTTGGCTCAAgccaaaactgtaaaataaaaataatagcaggATTTATAACAAGTGGTCCATTGGAAAACAAAGTTAACCATTTAAATTTTAAACGATGACATTAATTATATtccaattattttcttttttttcatgtgtGACATGCAGTGATAATGCAACGTCACGTCAACAACccatttttttccacttatttattaaatgcattgcTTTCTCTGATGTGAACAGCAGGAGAATCGCTGTTCTGCAGTgatgtagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtcctgagcAGCGCGGGTGTGGCGGCAGGTTCCTCCCACCTGTTGTGCTGCGGTGATGAGAGCTGCTCCTCCTGGGAGACACGCAAGACACACACTGTACTCCTGACAACAACAGCCTCTCAAATAATTACTGGAAATATCGTTTTAATCAGCGCCACATAAAGAGACATTTCTAACATTGTACAATGACTGCGAATCATGTGCGAAAGCGTCGAAAAGGAGGGTCAACGGAAAGTTAACGATGATTTGATAATTAACGACAGCTTCCATCCCTTGGAAGATGCAGCTCCAAACTGGAGTTGTTATAAACTGATTATTGATCCGGGTTTGACCAGCGGAAGTCAGAAAGTGTACCGATATGATGGACAGCACTTCAGCGAACCCCATCCTGAATGTTTTCCGGTGGATGTTGTACGAGATCCAAGAATTACTCGTTTTTGGGCAAAATTTAAAAACGCAGATCTTCCAGTCCCCAAACTCAAGGTTGATGAGTATTATGTCGGAGCACCTAAGGAGTTGACATTTGCAAGACTTAATGACAACATCAGAGATGGATTCCTATCTGAAATGTGTAAATGCTTTGGAGAGATTCAAGATTTGAAAGTTTTTTATAATCCAAAGAACAAGAAACATTTAGGACTAGCAAAGGTTGTTTTTGAATCTGTAAAAGCAGCAAATAATGCAGTAAAAAATCTCCACAAAACTTCTGTGATGGGAAACAACATTCATGTGGAGCTTGACCCTAAAGGCTTGAAGAGGCATCGATACTTCCAGATGATTGTTAATGGTTTATATACACCTTTTACTCTCCCTGTTGAAGAAGAGGCCTGGGGGCCGCAGTCACCATCTTCCATCACAGACTCCTTAATTGAGTGTGAATCACTAAAGAAGCTCACATATACATTGTCCTCCTCATCCTCAATATGTAATGGCTCCCCTTCTTTGGATTGTTCTACTCCTTTATCTATGGATACCGCCTACTCCAGCATGCATCAGGACACTCCCAGTAGCTTCTGGCAAACACCTCAATACCAAGACACTCCTCGCACCCCTTCTGTGACCCACAGTAGACCAGGCACACCATCTCAGTGTGAGAGGACTCCAAATGAATCTACACTGATAAACACTGGCCCCATTGTCCCTTTTATTCAACAATCCACCCTGAACATCtcacattttcagcctggtcaaccagctataAATAAACCTAGCACTATTCAACATGCTGTGCAAAACTTTTGGATGCTAAGTGGGACTCCCTCTCATAACGGCATCTTCTCAAATAGGCAGAGAACCCCAGGTGGCAATTCTCATCCTAGTAATCATGTACGGGGAGGACATCGAGTCAGACCTCTCGAAAGCAAGTACCAAAATGCATACAACCGGAGGCCACAACACCGCCACTATATACACAGACCTGTGTATCGGAGAGGTCACTACCACCGTGCACTTGCTACAAATCAAGTCACTTTGAACAGATTTCAGGAAACTCCAACCACACCTTTATATTCAGATAAGCTCACAGGCCGAAATTTTACCGACTCAATCAAGGGCCTCTGTGTTAATCACATATCTGTTGTTGAAGATCCACTATCTCTTCCTTACTCAGAGAAACTGCCTGAGAAGACTAATAATCACATTCATCCTGATATAGAGAAAAATGTGTATGCTTCGGAAAATACTTTAACTCAAACTGCTTCACCGGTACCTAGCAAGACAACTTACGATGTGAACCAAAATCATTATCCATCACAAGCCCAGTCTTCTCACTCATATGTCCCAAAACTGTGCTCTTCTCCTGAAACAACTGAAGATATTTCAGAGCCCACAGTTGAGTGTCCTTCTCCTGAATTTCCTGCTCCAGAGTCAAAACCTGACAGTCTGGACACTCGCATCCAGATGCTTTTAAGTGCTGGTAGTCCAGTTCTGCCTCTTCTGAACCAAGACAGTTCAGACTCAGAGTCTACTGAAGAGAATGATCATCATCAGCGCTCGTCCAGAGCCCCCAGCCCCACTCAGTCACTGACCACTGGTGTTTCTTTAAATTATGATGATATATCCTCTGTTGTTAGAGATACTAGTTCCTATCCCAGAGAAAATTTATCTGGAATGGAGGATGTGAATCCCACTGCATTGTATGATGTGGCAGAAGACAAACATGAACTTCCGTCACCAAAGAAGCCCTTATCCAAGATGCCCTCCAGCACCATTGTCAATCCAAATGAAGATCAAGATACTTCAGACCAGCCGTCTAGTATACCAGTGATCTGCACCAACAGGAGCACTTCAACACCTCCTATGTCTGAAATACCCCCACCTCCAATGCCATCTGTTCACTACCCCTTTTTACCTGGGTACTCTCTGCCTACATCTTCTTGCTCATTGTATCCTCCTTCAATCATCAAGCAAGTCTGCAGGCGATCAAACTGGCCGACTAGTTTGGCGCCTCTTCCTATTCCAACTAGAATAACACAAGGGCAAACCTCATTGTCACCCTCTTTCCTCCCTCAGTCCTTCAGCTTTATGACTCATCGTCCACCTTACCCTTCTCCTGGATGTTCATCTACTATGTTGAGGTACAGGCCACCCTGGCCTCCTCCTCCCCCCATTCCCAGGTTTGACCCTTCAGTGCCCCCACCAGGGTACGTCCCCATAAAAGAGTCACCACATAAGGCCACAGTTGATGGAGTTCTGGCTGTAGTTGCTTCTGAACTGCGGGCCATCGTGAAGAAAGACATACATCGCAGGATGATTGAGATTATGGCCTTCAAAGCATTTGATCAGTGGTGGGATGACAAAGAACAGGCAGCCAAGGTATCTGCCCCAGCTGTTAAATCGGTGGGAAATAAAGACATTAAACTCAGAGTGATGGAGCAGAGCCTGAGATTAGGGACTGCTGGGGGTGAAGGCTGTATACTGGACTCAGGAAAAATAAAGAGTCTACATGGTGCCATTAAATTGCCATCGTTTAAGAGGAAGGGTCCATCAGGTCAGGGCTCCACAGATGTTAAAAGGATATGTCCTTCTCCTGGTCCTGAACACTCTGAAGATGAAGAGTCAGAGCAGCAAACAGCCCCAGATTGTGTTGATGAAACTACAGTCTTAAATGCCAGTGAAGACACCATGGTCAAACGAAGGCATTCCAGGCCTTTAGCCTTAGATAGTGAAGAGGAGGATGATGAAGAGAATTCAGAGAAGGCGGAGGATCCAAAACCAGAACAAGTTCATGCATGTGATCGGGTTGACATTAAAAAAGTTACTAAAGACCAGACGAGTGATCCCTGTGTTATCGTTGATGATGAAGATACAGATACTGAAACTCTCAGCCATTCAAATTCATCTGCTTCTAAAAGCCAAGGATACGACTCTTTAGCCTCTCCCAGAAGTGCCTCTCACTACTCAGCTTGTTCTCCGTCTGTTATCGACTCCCCAGTTTCCTCTAGACCTGTCTTTGTCTCCTCAGATGACAGAAGCGACGAGTCCTCATCTGTGTCTTCTGCTGAGGATGATCAGTCAGATGGTCAAAGTTCTCCTGAAACTCCTCGTGAGGACAGAAGGGTAGTAGAGACTATATGGATTTCttcagatgaggatgatgatgaaaaCCAAGAGACTCTTCACACTCCTGTTTTCTTACCTTCACCGCACTCGGAAGAAGATCTCCAACCCCCTGTGACCCCATCAGCTCCAGATTCAATCGAAAGTGATGTAGACAATGACTTTTTTGATTTGGATCCAGCTCAAATGGAAGACCCAGAGGAAGAACTGAGTGTACGAGTGTATATGCAGGGACTAAAACTGCCTGAGCCTCTCAGATACACCTTACAGGACCCTGTGAAACACTGTTTGACAAACAAACTGAAGCTTCCAGACCCTGTGATATTCTTCTCAGATCAGGAATCAGAGCTGCCAAGCCCACCTTCTCCTACATACAGAGGATTATCAGATGATTTGGAGACCCAGTACACTACAGACTCAGAGGACCAGAGAGTCATCATGGAAGCGCTGGAGGATCCCGTGCACCTCAGACCCATCACACCCACTGGATTCTTGTCCGACAGTGACCCTGACATAGAGATGGGACGGAAATTTTCTCCTCCGGCCATCGAGGAGGTCCACCGACACCACTACCACCTCCTCCATCTCCTACAGGCATAAAAGAACTTCCATCCTCACCCCTTTACTACGGTATTCCTCTCCTGTCATCATATCCTGGATATGAGGAAATCCCAAAAACACCAGGCAGAGTCAATGATCCAGGTTTTGTTTTTCACTCTGAAAGAATAACACCACCACAAGAGCCTTCACGAACACTGGAAAGCCCCTGCAATCCCTTTCTGTCTTCTTTTGCTGACAG

Function

GO:

id name namespace
GO:0051568 histone H3-K4 methylation biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080522-1 Predicted to enable RNA binding activity and methyltransferase activity. Predicted to act upstream of or within chromatin organization and methylation. Orthologous to human SETD1B (SET domain containing 1B, histone lysine methyltransferase).

Ensembl:

ensembl_id ENSDART00000114080

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071464 lncRNA downstream 286897 34461160 ~ 34462391 (-) False XLOC_036584
TCONS_00071463 lncRNA downstream 286897 34461160 ~ 34462391 (-) True XLOC_036584
TCONS_00072493 lncRNA downstream 416712 34302507 ~ 34332576 (-) True XLOC_036582
TCONS_00072490 lncRNA downstream 416745 34294797 ~ 34332543 (-) False XLOC_036582
TCONS_00072491 lncRNA downstream 418004 34302047 ~ 34331284 (-) False XLOC_036582
TCONS_00072494 lncRNA upstream 817225 35579388 ~ 35591845 (-) False XLOC_036588
TCONS_00072495 lncRNA upstream 817225 35579388 ~ 35592508 (-) True XLOC_036588
TCONS_00072496 lncRNA upstream 1004469 35766632 ~ 35780687 (-) True XLOC_036590
TCONS_00071483 lncRNA upstream 1766070 36528233 ~ 36541856 (-) False XLOC_036601
TCONS_00071484 lncRNA upstream 1771397 36533560 ~ 36541482 (-) True XLOC_036601
TCONS_00071462 mRNA downstream 321917 34382501 ~ 34427371 (-) True XLOC_036583
TCONS_00071457 mRNA downstream 321922 34341885 ~ 34427366 (-) False XLOC_036583
TCONS_00071458 mRNA downstream 321924 34341890 ~ 34427364 (-) False XLOC_036583
TCONS_00071461 mRNA downstream 346449 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071460 mRNA downstream 346449 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071466 mRNA upstream 4048 34766211 ~ 34767412 (-) True XLOC_036586
TCONS_00071468 mRNA upstream 973071 35735234 ~ 35736141 (-) True XLOC_036589
TCONS_00071469 mRNA upstream 1046918 35809081 ~ 35960987 (-) True XLOC_036591
TCONS_00071470 mRNA upstream 1295155 36057318 ~ 36112278 (-) False XLOC_036592
TCONS_00071471 mRNA upstream 1295155 36057318 ~ 36125849 (-) True XLOC_036592
TCONS_00071453 other downstream 824777 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 830711 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071451 other downstream 836307 33906377 ~ 33912981 (-) False XLOC_036577
TCONS_00071450 other downstream 839221 33906377 ~ 33910067 (-) False XLOC_036577
TCONS_00071444 other downstream 965734 33783438 ~ 33783554 (-) True XLOC_036576
TCONS_00071467 other upstream 614080 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071488 other upstream 2052907 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071489 other upstream 2131470 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071508 other upstream 2694352 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 3861992 38624155 ~ 38631651 (-) True XLOC_036624

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_03407259_03420989.mRNA True 6054 mRNA 0.45 19 CI01000052 3406885 ~ 3420999 (-)