RNA id: TCONS_00072490


Basic Information

Item Value
RNA id TCONS_00072490
length 591
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id XLOC_036582
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 34271072 ~ 34332576 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTGTCCACCGAAACAAAGAACACAGTCAGGTGCTGGAGCTAAAACACACACCATTTTGAGAAGCCTTCCTTTAAAACAAACGATTCACACAGaaattctgataaaaaaaaaactacaaataaaacagAGAGTGTGCATGTGATTTGATTTTGGTAAGGATGGAATGACACTGGGAAGCAGTTTTGAAAAACTGAAAGGATCTTGATCAGCCCATCAACAGTAGCTCAACCAATGACCAGTGGGTTTGACTGTCCAATGACTAATGACAAACAAGCAGTGATGCCCCTGTTGAGGTGGTGGCACCCAGTGGAAGGCGGCGCAGCCAATGAGAAGTGACAGCACTGTAACAGCACTGAGAGAGGAAAGCGGCCGGCTGGATCCCTCTGCACCTCACGCTGGGCCTGCGCTGTAGATTGTCCTGCACGCCGAGGTTTAGATATCGACCACTGTCATGGCCTGGGGTCACAGCCTGCATGAGCCTCTTGGAGTTGAAGGTGGGAGATGTTGTGGCGCAGGTAAAATGTGTGAAGGTTTAGAGGATTGAACCTGCATTGTAAgaaaatttcaattaaataaaaaaggttatCT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0023052 signaling biological_process
GO:0007154 cell communication biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022836 gated channel activity molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001653 peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072070 lncRNA downstream 61215 34193756 ~ 34233582 (-) False XLOC_036581
TCONS_00072071 lncRNA downstream 61215 34219089 ~ 34233582 (-) True XLOC_036581
TCONS_00072069 lncRNA downstream 103952 34186225 ~ 34190845 (-) True XLOC_036580
TCONS_00072489 lncRNA downstream 179539 34087061 ~ 34115258 (-) True XLOC_036579
TCONS_00072068 lncRNA downstream 220195 34073942 ~ 34074602 (-) True XLOC_036578
TCONS_00071464 lncRNA upstream 128617 34461160 ~ 34462391 (-) False XLOC_036584
TCONS_00071463 lncRNA upstream 128617 34461160 ~ 34462391 (-) True XLOC_036584
TCONS_00072494 lncRNA upstream 1246845 35579388 ~ 35591845 (-) False XLOC_036588
TCONS_00072495 lncRNA upstream 1246845 35579388 ~ 35592508 (-) True XLOC_036588
TCONS_00072496 lncRNA upstream 1434089 35766632 ~ 35780687 (-) True XLOC_036590
TCONS_00071454 mRNA downstream 229224 33906381 ~ 34065573 (-) True XLOC_036577
TCONS_00071446 mRNA downstream 242778 33895773 ~ 34052019 (-) False XLOC_036577
TCONS_00071457 mRNA upstream 9342 34341885 ~ 34427366 (-) False XLOC_036583
TCONS_00071458 mRNA upstream 9347 34341890 ~ 34427364 (-) False XLOC_036583
TCONS_00071461 mRNA upstream 9993 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071460 mRNA upstream 9993 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071459 mRNA upstream 9993 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071453 other downstream 370286 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 376220 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071451 other downstream 381816 33906377 ~ 33912981 (-) False XLOC_036577
TCONS_00071450 other downstream 384730 33906377 ~ 33910067 (-) False XLOC_036577
TCONS_00071444 other downstream 511243 33783438 ~ 33783554 (-) True XLOC_036576
TCONS_00071467 other upstream 1043700 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071488 other upstream 2482527 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071489 other upstream 2561090 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071508 other upstream 3123972 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 4291612 38624155 ~ 38631651 (-) True XLOC_036624

Expression Profile

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