XLOC_036638 (zgc:174931)


Basic Information

Item Value
gene id XLOC_036638
gene name zgc:174931
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39839543 ~ 39847841 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071540
AAGAATCTGTTTGGATCACGTGTTTACATAAATTTGATAGGGAGTGATCGACGCATCGTGAAAGCAGATTAAGTCTTTTCTTATTAGTAGTCTCGGAAGTTTCTCCCGCACAATAATGAGTCTGAAAGGACCGCGTGAATTTAAAGGCCCGTCAAAAAGGAGGAGATCTGAGACTGAACGCGCTGCAGAACGACCGGCTGAATGCACAAGTAAAAGACTCAAGTCAACGAGAGCTTCTTCTCCAACACTCAGTTATATGTCAATGAGGACAGACTGGTCAATGGATCCACCTGCCAACTTCAAAGATAGAGAGACATTTCCTCGGCATTTAAGAGTAAAAGCAGCTTCTCCTTCATCCTCTTTGAGGACTGACTGGTCAATGGATCCACCAGCCAACTTTAAATGTGGAGAGTCGAACGCAAGAGAAAAAGTATCTTCAAAGGGACGACCAGCTAACTTCAAAGCTTCAGAAGACTTCCCATTGCATTCAAGAATGTGGACAGAGCATCACTTACAGTGTGCACTGTGTAAATCGATGTTAAAGGATCCAGCCTCCATCACATGTGGACATAATTTCTGCAGAGACTGTATTAATGCATTCTGGGACAATTGTGCAGGAGATTTTGTTTGTCCTCAGTGTGGTCAGGCATCAGAAACACGTCCAGTGCTGAACACAAATGTTGCTCTGGCTGAGGTGGTCAAAAACATGCAGCAAACCTTCAGTCCAGCTCTTCCTCCACAGTGTTATGCTGGACCAGAAGACGTGGTCTGTGATTTCTGCACCGAGAACCGATTGAAAGCTGTGAAGTCTTGTTCAACATGTGGTGTTTTTCTCTGTGAGACTCACATCAGGCAACATTACACAATACCAGcactacagaaacacacactgcgtGACGTGACCGGAGAAGATCAGATGAAGATGAAACTCTTACTGGAGCAACAGAAAACTGTCAATATTTTCAGTAGTGTTACCAGTGGACAACAGTATCAGACAGACAAGACTCAAGACCCTATAAAGGATATTGCTGTCAAGAGCTTTTTTGAGTCATTGTTGAAAAATGCCACACTTCAGAAACGTCCAAAAAAATTCACCAAGCCCTCCAGACCTAATCCGAGAGATAATAAAGATGTTAGGCGTCTTACACACGTGTGCTCGACACTTCAGCAAGATATTTCTGGGCTTAAAAAGAGCATCTCGAAGTTTACAAAAGTAAAGCATACTAAAAAAGCAATCAATTATAAAGAGGATTCTGAAcgtgattatgatgatgatgatgatgatgaagattcaGATGAAAGGAGTGATGATGAAGAGAGCTATGAAGATTACTCTGATGAGGAGCAAGAAGGCTCTGAAAATAGTAGCTATGATGAGGAGGACGAGGATGAAGATAGTAGTGAGAATGAGGAAGACGGCTCTGAATACAGTGATGAGGGATCTGATGATGAGCATACGGGAAGATCTGAGGATCGCAGTTCTGATGAATACAGCACTGAGGATGACGAGGAGGACTATTGATATGACAAATGTGTGAATCTGAGTTGGTGATTAATAATAGATAATGTTTTGTTAACTTAATGGGCCTTTCAGTActgcattttaattcaaaatgttGCTATGCATTGTTTACAGTGCATAAAACATGGGCTTTTACACTTGAAATACTGTAGAGGTACATTTAGTTCTTAAAACCTGGTGACAGAaatccatgtttgtttgttttgttttttggttcaTGCTGTTTATAATTTACGCAAGTTAAAGCTCATCACTGATTGTACTATCGAGTGTATAGCCACATTTTCTTACTACAATGCAAAAAGTATCAAGCTGAATTTACTTGGCTGAATAGCTTATGGAAACTGAATCCCTCAAATTTAATAAGCAAATTAGTTCCCAACTTTGAGTAGATACAACTTACTTTTACTTTATGCAGGTAACTTGTTAACTTGTATTGGTTAAGAGAGTGCTGTACATTGAATCCCATAAAACGTGTGAATTCGCCTTTTGTCTGAACATGTGCTGATATACCTGCCAACCAAAGTGTGGTACTGCTGAAACAATACGAAAAAATCAAACAGCTCCAGCCTTTAGTCAAACTTTTTAAAAGTCAGTACAGCTAAATTCTTCCAGTTTAACTACTGGATCCCCCTTAAAGTTTGCATAACACAGTAAAATCAACCAAAACTAGTTACAAGCATTTTTTAAGATTGACTGTTTACTTTTTACTGTGTATTTGCCATTCAAGCCTTATAACTTAAACAGCTCCATTACTGTACAAAGCAATATTGCTTAGCATCTAGTTGTATAAATCTTAACACAACTATAGGCTACTACTTCTATAATTGCTAACATAAATGCAAAGTGGTGCAAAACACAacttatgattcattcattttcttttcagcttagtccctctattaatctgggggtcgccacagcagaatgaaccaccaac
>TCONS_00071541
CTGTGTTTCACTTTCTCAGGTCTCGGAAGTTTCTCCCGCACAATAATGAGTCTGAAAGGACCGCGTGAATTTAAAGGCCCGTCAAAAAGGAGGAGATCTGAGACTGAACGCGCTGCAGAACGACCGGCTGAATGCACAAGTAAAAGACTCAAGTCAACGAGAGCTTCTTCTCCAACACTCAGTTATATGTCAATGAGGACAGACTGGTCAATGGATCCACCTGCCAACTTCAAAGATAGAGAGACATTTCCTCGGCATTTAAGAGTAAAAGCAGCTTCTCCTTCATCCTCTTTGAGGACTGACTGGTCAATGGATCCACCAGCCAACTTTAAATGTGGAGAGTCGAACGCAAGAGAAAAAGTATCTTCAAAGGGACGACCAGCTAACTTCAAAGCTTCAGAAGACTTCCCATTGCATTCAAGTGTTATGCTGGACCAGAAGACGTGGTCTGTGATTTCTGCACCGAGAACCGATTGAAAGCTGTGAAGTCTTGTTCAACATGTGGTGTTTTTCTCTGTGAGACTCACATCAGGCAACATTACACAATACCAGcactacagaaacacacactgcgtGACGTGACCGGAGAAGATCAGATGAAGATGAAACTCTTACTGGAGCAACAGAAAACTGTCAATATTTTCAGTAGTGTTACCAGTGGACAACAGTATCAGACAGACAAGACTCAAGACCCTATAAAGGATATTGCTGTCAAGAGCTTTTTTGAGTCATTGTTGAAAAATGCCACACTTCAGAAACGTCCAAAAAAATTCACCAAGCCCTCCAGACCTAATCCGAGAGATAATAAAGATGTTAGGCGTCTTACACACGTGTGCTCGACACTTCAGCAAGATATTTCTGGGCTTAAAAAGAGCATCTCGAAGTTTACAAAAGTAAAGCATACTAAAAAAGCAATCAATTATAAAGAGGATTCTGAAcgtgattatgatgatgatgatgatgatgaagattcaGATGAAAGGAGTGATGATGAAGAGAGCTATGAAGATTACTCTGATGAGGAGCAAGAAGGCTCTGAAAATAGTAGCTATGATGAGGAGGACGAGGATGAAGATAGTAGTGAGAATGAGGAAGACGGCTCTGAATACAGTGATGAGGGATCTGATGATGAGCATACGGGAAGATCTGAGGATCGCAGTTCTGATGAATACAGCACTGAGGATGACGAGGAGGACTATTGATATGACAAATGTGTGAATCTGAGTTGGTGATTAATAATAGATAATGTTTTGTTAACTTAATGGGCCTTTCAGTActgcattttaattcaaaatgttGCTATGCATTGTTTACAGTGCATAAAACATGGGCTTTTACACTTGAAATACTGTAGAGGTACATTTAGTTCTTAAAACCTGGTGACAGAa
>TCONS_00071542
ACGCATCGTGAAAGCAGATTAAGTCTTTTCTTATTAGTAGTCTCGGAAGTTTCTCCCGCACAATAATGAGTCTGAAAGGACCGCGTGAATTTAAAGGCCCGTCAAAAAGGAGGAGATCTGAGACTGAACGCGCTGCAGAACGACCGGCTGAATGCACAAGTAAAAGACTCAAGTCAACGAGAGCTTCTTCTCCAACACTCAGTTATATGTCAATGAGGACAGACTGGTCAATGGATCCACCTGCCAACTTCAAAGATAGAGAGACATTTCCTCGGCATTTAAGAGTAAAAGCAGCTTCTCCTTCATCCTCTTTGAGGACTGACTGGTCAATGGATCCACCAGCCAACTTTAAATGTGGAGAGTCGAACGCAAGAGAAAAAGTATCTTCAAAGGGACGACCAGCTAACTTCAAAGCTTCAGAAGACTTCCCATTGCATTCAAGGTGAATGTTAGCTCTAGAATGCGTAGTTCTGGTGTTCGGTGCTAATTATCGTGATAAATCACAAATCTAGAGTGCATTACAAATCtttataaagtatttttaaaaattgtgtataAGGTGTTAAAATAAGCCAGTAAATTAGCCAGTTATAATCATAACATTACTaactttaaaaaaggaaatacaGGATCATAGGATTTCTAAAATATGGAATTTGAAAAGGTTTGTTCCGGATATTGAAAGTCAttgtattttatctttttttttttcatggaatAACAGGCATTTTTGTT

Function

symbol description
zgc:174931 Predicted to enable metal ion binding activity.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-43 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000092626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071540 False 2462 mRNA 0.39 8 39839543 39847841
TCONS_00071541 False 1388 nonsense_mediated_decay 0.41 7 39840297 39847614
TCONS_00071542 True 735 mRNA 0.38 6 39843965 39847791

Neighbor

gene id symbol gene type direction distance location
XLOC_036637 ftr98 coding downstream 883 39827198 ~ 39838660 (-)
XLOC_036636 zgc:162025 coding downstream 16626 39816523 ~ 39822917 (-)
XLOC_036635 si:ch211-170d8.8 coding downstream 79116 39742459 ~ 39760427 (-)
XLOC_036633 CT027598.2 coding downstream 90136 39708674 ~ 39749407 (-)
XLOC_036634 asgrl1 coding downstream 99903 39733278 ~ 39739640 (-)
XLOC_036639 unc119.1 coding upstream 663 39848504 ~ 39859688 (-)
XLOC_036640 CR376731.1 coding upstream 16999 39864840 ~ 39864958 (-)
XLOC_036641 mlec coding upstream 22873 39870714 ~ 39884359 (-)
XLOC_036642 cabp1a coding upstream 42345 39890186 ~ 39952727 (-)
XLOC_036643 asphd2 coding upstream 117276 39965117 ~ 39984593 (-)
XLOC_036631 NA non-coding downstream 220411 39614757 ~ 39619132 (-)
XLOC_036630 NA non-coding downstream 529013 39302772 ~ 39310530 (-)
XLOC_036629 NA non-coding downstream 546869 39275202 ~ 39292674 (-)
XLOC_036628 NA non-coding downstream 706905 39131799 ~ 39132638 (-)
XLOC_036626 CR392001.2 non-coding downstream 900583 38938290 ~ 38938960 (-)
XLOC_036645 CR388077.1 non-coding upstream 260044 40107885 ~ 40111658 (-)
XLOC_036656 NA non-coding upstream 1550128 41397969 ~ 41425815 (-)
XLOC_036659 NA non-coding upstream 1936155 41783996 ~ 41784417 (-)
XLOC_036660 NA non-coding upstream 1936632 41784473 ~ 41784773 (-)

Expression


Co-expression Network