XLOC_036629


Basic Information

Item Value
gene id XLOC_036629
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39275202 ~ 39292674 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072076
AGTAAAGCAACTACGAAAGAGAACTATTTGTGCATCTTAAAGCATCGATGCTTCACAAAAGGATGGATAACTGGTATGCCGTAATGATGGTCACAGAAATCCTAAATGAAGGCAGTAGTTCTGTTTCTGTTTACTACAAGGGATATCTTTCCAAATGAGGAAATTACCCACAACTATGGTGATTCTTCTTGGCCATGGCATTCAAGGGAATTGCATGAAGCATCATTGGTGATTGAGATTGAATGCAGTATAAAAACTTCCATGTCAGGGAAAGAGAAACAATTATGTGAAAAGTCATCAATGGCAATGATTGAATGTGGTTCGAAAAATTTCTACATCAGGGAAGGAGAAAAAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTGCGAAAACATCCACATCAGGGAAAAAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGTGCGAAAACTTCCAAGTCAGGGAAAAAGACAGAATTATGTGAAGAGTCATCAATGGCGAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACATGTCGCCATGAAGTACACAGTGCTGTTGTTTCCAGTTTGCATTCTTGCGATGAATGTAGTGGTCCTATGTCAAGTAGAAAATGAACACTTTAACTTGCAAATACACCAAATCAAGgaaataaaattgataaaattATGGAGCACACTGAAGTGGATGCAGTCATGGAACATTTTAAAAGGACACCTCACCACAAAAGCAGAGCGTGATCAATGCAAGATAGCAGAAGACAaagttttttccctctccgctgtcgcgaCCCGCTTGCATGgcttgggatcggtagagctacacatcgatgaatttgctcttcagtgtttgaactctcagtaatgatttaaatcacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtaaagctgctttgacaccatttacattgtaaaagcgctatacaaataaagctgaattgaattgaattaaaagaaGAATGTCATGTACACCAAGGATGGCATTACAGTAGGGCACAATGCCTTTTCCCCCCCTTagtccttccccttacccctaccccttgttttgcgcgttcacgtcaaggggtagggctgtcccaattctctttagcttgaagtcgttgggctaagaggaaggggtgaatagccctttgaacaaagatttttcaggtccacacttgaaaccaaggggtaaaaaaATTTCCCACAATACACCTGCCACAGCTgcacccagaagtaaggagaatttttctttatttatttatttatttttatgacaaacaaacattcaatatattcataactacgttcatgttttactgtcataGTTTTCTTTTTTAACGCTATAATTtgcaatctataatccataataatcaCTCCTTtgcagcagtcccacaacattctgacacttgatgacactggaataccctgccAGAAAAGTCTAGTGCCTGTGATGAgctgtttacagtgtctgctataatgttagtgtggttttcgtgtgtttacatagatgaatatggccactgtgtgtatacagtatatacagtacagttacaatcttattgccacattagatcattatgataacatgatgtgccttcagtgatttcctcaagataaatatcaaaaaataacacaactgaaataactacagcagtcgcgatcatctgatctcatatgaagcataaAATCACGATGGCAtatgctgtcccaattcttatggGTACATCTGAAGCCCTTTCCTTTAACTTTTGGTTGTaggggccaaggggaaggggtaggggtacaaaaatagaattgggattgggcctaaatcagttttcattttttggttgaactttaAGGGGCAGGACCCTTAAAAATGCTGtcattaagctgtttttttaagcCTTGTTGAATAAATGCATTTGAGACAGTGA
>TCONS_00072505
CTGGATTTCATGTCAATCAATATCAACCCGCTTCACGTTTCCAATTGGCTGCCGAAGACACGAGAGGTAGACCTTTAATTCCGCCGGAGTAAAGCAACTACGAAAGAGAACTATTTGTGCATCTTAAAGCATCGATGCTTCACAAAAGGATGGATAACTGGTATGCCGTAATGATGGTCACAGAAATCCTAAATGAAGGCAGTAGTTCTGTTTCTGTTTACTACAAGGGATATCTTTCCAAATGAGGAAATTACCCACAACTATGGTGATTCTTCTTGGCCATGGCATTCAAGGGAATTGCATGAAGCATCATTGGTGATTGAGATTGAATGCAGTATAAAAACTTCCATGTCAGGGAAAGAGAAACAATTATGTGAAAAGTCATCAATGGCAATGATTGAATGTGGTTCGAAAAATTTCTACATCAGGGAAGGAGAAAAAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTGCGAAAACATCCACATCAGGGAAAAAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGTGCGAAAACTTCCAAGTCAGGGAAAAAGACAGAATTATGTGAAGAGTCATCAATGGCGAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACATGTCGCCATGAAGTACACAGTGCTGTTGTTTCCAGTTTGCATTCTTGCGATGAATGTAGTGGTCCTATGTCAAGTAGAAAATGAACACTTTAACTTGCAAATgcagtgagatgcgccttgtttttggccccttgttcaactgcaagacatgcTTAACTTGCGGGACGACAACgtgtaacccgtgcctacagacacatttgccaaagaagcaaaatggaagaagaatattgc
>TCONS_00072506
CTGGATTTCATGTCAATCAATATCAACCCGCTTCACGTTTCCAATTGGCTGCCGAAGACACGAGAGGTAGACCTTTAATTCCGCCGGAGTAAAGCAACTACGAAAGAGAACTATTTGTGCATCTTAAAGCATCGATGCTTCACAAAAGGATGGATAACTGGTATGCCGTAATGATGGTCACAGAAATCCTAAATGAAGGCAGTAGTTCTGTTTCTGTTTACTACAAGGGATATCTTTCCAAATGAGGAAATTACCCACAACTATGGTGATTCTTCTTGGCCATGGCATTCAAGGGAATTGCATGAAGCATCATTGGTGATTGAGATTGAATGCAGTATAAAAACTTCCATGTCAGGGAAAGAGAAACAATTATGTGAAAAGTCATCAATGGCAATGATTGAATGTGGTTCGAAAAATTTCTACATCAGGGAAGGAGAAAAAATTGCATGAAGAGTCATTGGTGACTGGGATCAAATGCTGTGCGAAAACATCCACATCAGGGAAAAAGACAGAGTTGAATGAAGAGTCATTGGTGACTGGGATCAAATGCAGTGCGAAAACTTCCAAGTCAGGGAAAAAGACAGAATTATGTGAAGAGTCATCAATGGCGAGGATCAAATGCAGTGCAGAAACTTCCACATCAGGGAAAGAGACATGTCGCCATGAAGTACACAGTGCTGTTGTTTCCAGTTTGCATTCTTGCGATGAATGTAGTGGTCCTATGTCAAGTAGAAAATGAACACTTTAACTTGCAAATAAATCAGGGTCCTAGAGTCAGGAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0033673 negative regulation of kinase activity biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0006396 RNA processing biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0071901 negative regulation of protein serine/threonine kinase activity biological_process
GO:0043407 negative regulation of MAP kinase activity biological_process
GO:0043409 negative regulation of MAPK cascade biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0051058 negative regulation of small GTPase mediated signal transduction biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0051348 negative regulation of transferase activity biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0070013 intracellular organelle lumen cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072076 False 2005 lncRNA 0.39 9 39275202 39292587
TCONS_00072505 False 886 lncRNA 0.41 9 39277520 39292674
TCONS_00072506 True 781 lncRNA 0.41 9 39279201 39292674

Neighbor

gene id symbol gene type direction distance location
XLOC_036628 NA coding downstream 142564 39131799 ~ 39132638 (-)
XLOC_036627 CR392001.3 coding downstream 309942 38963323 ~ 38965260 (-)
XLOC_036626 CR392001.2 coding downstream 336242 38938290 ~ 38938960 (-)
XLOC_036625 pcsk5b coding downstream 464969 38649989 ~ 38810233 (-)
XLOC_036624 CR628410.1 coding downstream 643551 38624155 ~ 38631651 (-)
XLOC_036630 NA coding upstream 10098 39302772 ~ 39310530 (-)
XLOC_036631 NA coding upstream 322083 39614757 ~ 39619132 (-)
XLOC_036632 si:dkey-63d15.12 coding upstream 358266 39650940 ~ 39654669 (-)
XLOC_036633 CT027598.2 coding upstream 416000 39708674 ~ 39749407 (-)
XLOC_036634 asgrl1 coding upstream 440604 39733278 ~ 39739640 (-)
XLOC_036622 NA non-coding downstream 687768 38586053 ~ 38587434 (-)
XLOC_036614 NA non-coding downstream 1308342 37966148 ~ 37966860 (-)
XLOC_036640 CR376731.1 non-coding upstream 572166 39864840 ~ 39864958 (-)
XLOC_036645 CR388077.1 non-coding upstream 815211 40107885 ~ 40111658 (-)
XLOC_036656 NA non-coding upstream 2105295 41397969 ~ 41425815 (-)

Expression


Co-expression Network