XLOC_036630


Basic Information

Item Value
gene id XLOC_036630
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39302772 ~ 39310530 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072077
GGCAGAGGTTCATGGAGAGACATTTGTTTGTCTGTTAGCCTCTCGTTTTTATTGTCTGGCAATAAATCCAACTTTTGAAATCAAGACCCACTGACTCGATTGCTGATTGAAAGACAAGGAACAGAACACGACAAATTGGTGACCCCGACGTGATTTGGCTAGGAGCAACGGAGTGGGGACCTCGCTGGCGGAGTCTGATGCGGGCGACACAATTGCAGTGGCCACTGTGAAAAAAGCTATTTATGACCAGGAAACCAGGCGACAGCCACTTGAGGAGGGAGAAACGCCAGGACCGGTGGTGCCAGGTGATCAGGTGTATCTAAAGGTGTTCCGGAGAAAGTGGAATGAGCCAAGACGGGAAGGACCATATCGAGTTGTGAGAGCCACCCCAACTGCAATTCAAGTGGAGGGGAGTACAACGTGGTACCATCTAAACCACTGCACGAGGGTTCCAAAGGAAAAAGTGACAGCAGGAGAACACCAGCAGGAAACTGTCAGCCCAGAAAAGCCCACAGCAGAGAGTGATGGTGAGCAAAATGTGGCAGAGAATGATGAATAAAACTATTAGACAAGTGACTATGATAATATGTCTAAGCATCATATACATG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014808 release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0048753 pigment granule organization biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0055001 muscle cell development biological_process
GO:0070296 sarcoplasmic reticulum calcium ion transport biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:1903514 release of sequestered calcium ion into cytosol by endoplasmic reticulum biological_process
GO:0032438 melanosome organization biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0043473 pigmentation biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0042470 melanosome cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072077 True 608 lncRNA 0.48 2 39302772 39310530

Neighbor

gene id symbol gene type direction distance location
XLOC_036629 NA coding downstream 10098 39275202 ~ 39292674 (-)
XLOC_036628 NA coding downstream 170134 39131799 ~ 39132638 (-)
XLOC_036627 CR392001.3 coding downstream 337512 38963323 ~ 38965260 (-)
XLOC_036626 CR392001.2 coding downstream 363812 38938290 ~ 38938960 (-)
XLOC_036625 pcsk5b coding downstream 492539 38649989 ~ 38810233 (-)
XLOC_036631 NA coding upstream 304227 39614757 ~ 39619132 (-)
XLOC_036632 si:dkey-63d15.12 coding upstream 340410 39650940 ~ 39654669 (-)
XLOC_036633 CT027598.2 coding upstream 398144 39708674 ~ 39749407 (-)
XLOC_036634 asgrl1 coding upstream 422748 39733278 ~ 39739640 (-)
XLOC_036635 si:ch211-170d8.8 coding upstream 431929 39742459 ~ 39760427 (-)
XLOC_036624 CR628410.1 non-coding downstream 671121 38624155 ~ 38631651 (-)
XLOC_036622 NA non-coding downstream 715338 38586053 ~ 38587434 (-)
XLOC_036640 CR376731.1 non-coding upstream 554310 39864840 ~ 39864958 (-)
XLOC_036645 CR388077.1 non-coding upstream 797355 40107885 ~ 40111658 (-)
XLOC_036656 NA non-coding upstream 2087439 41397969 ~ 41425815 (-)
XLOC_036659 NA non-coding upstream 2473466 41783996 ~ 41784417 (-)

Expression


Co-expression Network