RNA id: TCONS_00072077


Basic Information

Item Value
RNA id TCONS_00072077
length 608
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_036630
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39302772 ~ 39310530 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGAGGTTCATGGAGAGACATTTGTTTGTCTGTTAGCCTCTCGTTTTTATTGTCTGGCAATAAATCCAACTTTTGAAATCAAGACCCACTGACTCGATTGCTGATTGAAAGACAAGGAACAGAACACGACAAATTGGTGACCCCGACGTGATTTGGCTAGGAGCAACGGAGTGGGGACCTCGCTGGCGGAGTCTGATGCGGGCGACACAATTGCAGTGGCCACTGTGAAAAAAGCTATTTATGACCAGGAAACCAGGCGACAGCCACTTGAGGAGGGAGAAACGCCAGGACCGGTGGTGCCAGGTGATCAGGTGTATCTAAAGGTGTTCCGGAGAAAGTGGAATGAGCCAAGACGGGAAGGACCATATCGAGTTGTGAGAGCCACCCCAACTGCAATTCAAGTGGAGGGGAGTACAACGTGGTACCATCTAAACCACTGCACGAGGGTTCCAAAGGAAAAAGTGACAGCAGGAGAACACCAGCAGGAAACTGTCAGCCCAGAAAAGCCCACAGCAGAGAGTGATGGTGAGCAAAATGTGGCAGAGAATGATGAATAAAACTATTAGACAAGTGACTATGATAATATGTCTAAGCATCATATACATG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014808 release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0048753 pigment granule organization biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0055001 muscle cell development biological_process
GO:0070296 sarcoplasmic reticulum calcium ion transport biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:1903514 release of sequestered calcium ion into cytosol by endoplasmic reticulum biological_process
GO:0032438 melanosome organization biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0043473 pigmentation biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0042470 melanosome cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072505 lncRNA downstream 10098 39277520 ~ 39292674 (-) False XLOC_036629
TCONS_00072506 lncRNA downstream 10098 39279201 ~ 39292674 (-) True XLOC_036629
TCONS_00072076 lncRNA downstream 10185 39275202 ~ 39292587 (-) False XLOC_036629
TCONS_00072504 lncRNA downstream 170134 39131799 ~ 39132638 (-) False XLOC_036628
TCONS_00072075 lncRNA downstream 170134 39131799 ~ 39132638 (-) False XLOC_036628
TCONS_00072507 lncRNA upstream 304227 39614757 ~ 39619132 (-) True XLOC_036631
TCONS_00071544 lncRNA upstream 545366 39855896 ~ 39859530 (-) True XLOC_036639
TCONS_00071571 lncRNA upstream 1146583 40457113 ~ 40459317 (-) False XLOC_036651
TCONS_00071572 lncRNA upstream 1150771 40461301 ~ 40464795 (-) True XLOC_036651
TCONS_00072508 lncRNA upstream 2087439 41397969 ~ 41425815 (-) True XLOC_036656
TCONS_00071529 mRNA downstream 337512 38963323 ~ 38965260 (-) True XLOC_036627
TCONS_00071527 mRNA downstream 492539 38649989 ~ 38810233 (-) True XLOC_036625
TCONS_00071525 mRNA downstream 686060 38593904 ~ 38616712 (-) True XLOC_036623
TCONS_00071523 mRNA downstream 796433 38505383 ~ 38506339 (-) False XLOC_036621
TCONS_00071530 mRNA upstream 340410 39650940 ~ 39654669 (-) True XLOC_036632
TCONS_00071531 mRNA upstream 398144 39708674 ~ 39749407 (-) True XLOC_036633
TCONS_00071532 mRNA upstream 422748 39733278 ~ 39739640 (-) False XLOC_036634
TCONS_00071533 mRNA upstream 423059 39733589 ~ 39739627 (-) False XLOC_036634
TCONS_00071534 mRNA upstream 424825 39735355 ~ 39739056 (-) True XLOC_036634
TCONS_00071526 other downstream 671121 38624155 ~ 38631651 (-) True XLOC_036624
TCONS_00071508 other downstream 1845574 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071489 other downstream 2334042 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071488 other downstream 2487550 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071467 other downstream 3926415 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071541 other upstream 529767 39840297 ~ 39847614 (-) False XLOC_036638
TCONS_00071545 other upstream 554310 39864840 ~ 39864958 (-) True XLOC_036640
TCONS_00071554 other upstream 797355 40107885 ~ 40109971 (-) False XLOC_036645
TCONS_00071555 other upstream 797512 40108042 ~ 40111658 (-) False XLOC_036645
TCONS_00071556 other upstream 797518 40108048 ~ 40111273 (-) False XLOC_036645

Expression Profile

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