Fish Transcriptome and Expression Database

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model fish

XLOC_036640 (CR376731.1)

Basic Information

Item	Value
gene id	XLOC_036640
gene name	CR376731.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007119.7
NCBI id	CM002892.2
chromosome length	54304671
location	39864840 ~ 39864958 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071545
GTTTGCAGCTTAATAtcatcctgcagcccaagaccggttactgaCTGACACTAAGCAGGGCTAAGCCTGGTCAgtagctggatgggagaccagATGGGAAAGCTTGATCGCTGTTGAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083988

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00071545	True	119	rRNA	0.50	1	39864840	39864958

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_036639	unc119.1	coding	downstream	5152	39848504 ~ 39859688 (-)
XLOC_036638	zgc:174931	coding	downstream	16999	39839543 ~ 39847841 (-)
XLOC_036637	ftr98	coding	downstream	26180	39827198 ~ 39838660 (-)
XLOC_036636	zgc:162025	coding	downstream	41923	39816523 ~ 39822917 (-)
XLOC_036635	si:ch211-170d8.8	coding	downstream	104413	39742459 ~ 39760427 (-)
XLOC_036641	mlec	coding	upstream	5756	39870714 ~ 39884359 (-)
XLOC_036642	cabp1a	coding	upstream	25228	39890186 ~ 39952727 (-)
XLOC_036643	asphd2	coding	upstream	100159	39965117 ~ 39984593 (-)
XLOC_036644	ggt1a	coding	upstream	177674	40042632 ~ 40075983 (-)
XLOC_036645	CR388077.1	coding	upstream	242927	40107885 ~ 40111658 (-)
XLOC_036631	NA	non-coding	downstream	245708	39614757 ~ 39619132 (-)
XLOC_036630	NA	non-coding	downstream	554310	39302772 ~ 39310530 (-)
XLOC_036629	NA	non-coding	downstream	572166	39275202 ~ 39292674 (-)
XLOC_036628	NA	non-coding	downstream	732202	39131799 ~ 39132638 (-)
XLOC_036626	CR392001.2	non-coding	downstream	925880	38938290 ~ 38938960 (-)
XLOC_036656	NA	non-coding	upstream	1533011	41397969 ~ 41425815 (-)
XLOC_036659	NA	non-coding	upstream	1919038	41783996 ~ 41784417 (-)
XLOC_036660	NA	non-coding	upstream	1919515	41784473 ~ 41784773 (-)
XLOC_036662	BX470105.1	non-coding	upstream	2269045	42134003 ~ 42134119 (-)

Expression

Co-expression Network