XLOC_036635 (si:ch211-170d8.8)


Basic Information

Item Value
gene id XLOC_036635
gene name si:ch211-170d8.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39742459 ~ 39760427 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071536
CGTTGAAAACTCACCTGCATTTTCACCATGAGCTGCAGCCGAAAGCTGACGGCTTTGGGTCAGGGCAGCGGACTTGAAGAGCTTCTGGGACAAGCGTCCGATCGCAGCCATTTTTGCGGAGACTGGAGGCAGAGCGGCGGAGGAAGCTTTAAAGCGGTTTTGCTGTGGGAAATGGACGCGCCCGCCGCCTACCGGCGAGGTGGACCACCGACACGAGCTCTGCAATGTTCTTGGCAGAAAACCCAGAGCTTTGGTTTGGCTGGGTGGAGGAGACCAGCCCCTCTGGCGTCATCCAGCCATTCCTCACAAGTCTTCACTTTCCATGCTATGCCATGGAAAACGTAAGGAAACAAGCTCATCAATGAACACTTGATTTATATTGTACCGCCACGAATCAGGCTTATAGGCTGACCTCAAGGAATGCAGACCGACAAACTCGCAGAAGATGTGGAGGGAAATCCTGACAGGGTGGATCCCTACCACCAGCAAGGCAAAGTGGCTTGTGCCATGTTCACAGTTCTCCTCCTCTTTTCATTCTTGGTAATAGGAATCGTAACGGGTTTCAACTTCAAGAAGAGTCCACAAGAGGATCAGAACAGAGGTCTTCTTTCTGATGACATCACGCCAATCCCGTTCCAGTATAAAAGTGATAAAGGTCTCTGCTCAGATGGTTGGCTTTTATATAAGAACACCTGTTATTTGTTAGAGAATGTTTATGGGACATGGAAATCCTCAAAGTCTTTATGCCTTAGCCGTGGGGCACATCTGATGGTTGTGGACAGCGAGGAGGAGCTGGAGTTTATTTCAAGAGTTGTTCAGAAATGGACTGACTACTGGATAGGTCTCAAGAGGGACAAAATGGGCAAATGGTTCTGGGTTAATGGAGATGATTATCATTCAAATCTACATTTCTGGGATGAAAATCAGCCTGCTCATGGTGGTATGGAGTCCTGTGTCTACTTAAAAGGATCTGACACAGTGAATCGGAAGCTGTTTCATGATTCTGACTGCAGCAGTCAGCGTTTTCACATTTGTGAACACCAAATATAAACTGCGTAGAAGGAAACGTTTCCTAGTTACCTGTTTTCCAAAAATCCTGCTCTGGATAAACCCCTTCTGATTTTTTGTTAAATCTTTATACATGTCTGCTTTTGGGATTTAAGCTGTACATGCTTGACTGGTGCACCTGTACTTGAgctttttacatttgtttgagtTTCAAGACCTGTTATATGAACATAACCTGTTgagtaaaatatttactaaaattcTTATTTTGTTCATCTTATCTTTAAAGCAATTGTCTGttacataattattatattattataattttataagttTATGTACAAACACTTGAGTACAGTATCACAAATATAATTTCAGTTTACAATTGTTGTAATAAAATGAAGTGtgatcttaataaaaaaaaagaaaaggatttGACAAACACATTCAGAAGTGTTCATTGATAGTGCATAGTGACCAAAATATATACTGTCAATCTGAAAGAGCTTTGATTCTGTTACCATTCACTCACACCCCACAAACCTGTCTgatattatttcttctgttgaacacaaagaatgaataatgttgaataaaatggctattgacttccatagtattttttgttcttaCTGTGGATATCAACGGCTaattttcccaacattcttctaaatatcttgtaTTGTGTTTAGAGCATTTAGAACCACTTGAAA
>TCONS_00071535
CGTTGAAAACTCACCTGCATTTTCACCATGAGCTGCAGCCGAAAGCTGACGGCTTTGGGTCAGGGCAGCGGACTTGAAGAGCTTCTGGGACAAGCGTCCGATCGCAGCCATTTTTGCGGAGACTGGAGGCAGAGCGGCGGAGGAAGCTTTAAAGCGGTTTTGCTGTGGGAAATGGACGCGCCCGCCGCCTACCGGCGAGGTGGACCACCGACACGAGCTCTGCAATGTTCTTGGCAGAAAACCCAGAGCTTTGGTTTGGCTGGGTGGAGGAGACCAGCCCCTCTGGCGTCATCCAGCCATTCCTCACAAGTCTTCACTTTCCATGCTATGCCATGGAAAACGTAAGGAAACAAGCTCATCAGTAAGTTGAAGTTTTCTTAAAAGACTATTTGTGCTTTGTTGATTAGATTACTCTAAATGAGTATGTTGATGCTCATTGTTTTTAGGAGATGTGTTGTCTCAGTGAATGTTTTAAAGAGGTGTTTTCTTTTACATTTGCAGATGAACACTTGATTTATATTGTACCGCCACGAATCAGGCTTATAGGCTGACCTCAAGGAATGCAGACCGACAAACTCGCAGAAGATGTGGAGGGAAATCCTGACAGGGTGGATCCCTACCACCAGCAAGGCAAAGTGGCTTGTGCCATGTTCACAGTTCTCCTCCTCTTTTCATTCTTGGTAATAGGAATCGTAACGGGTTTCAACTTCAAGAAGAGTCCACAAGAGGATCAGAACAGAGGTCTTCTTTCTGATGACATCACGCCAATCCCGTTCCAGTATAAAAGTGATAAAGGTCTCTGCTCAGATGGTTGGCTTTTATATAAGAACACCTGTTATTTGTTAGAGAATGTTTATGGGACATGGAAATCCTCAAAGTCTTTATGCCTTAGCCGTGGGGCACATCTGATGGTTGTGGACAGCGAGGAGGAGCTGGAGTTTATTTCAAGAGTTGTTCAGAAATGGACTGACTACTGGATAGGTCTCAAGAGGGACAAAATGGGCAAATGGTTCTGGGTTAATGGAGATGATTATCATTCAAATCTACATTTCTGGGATGAAAATCAGCCTGCTCATGGTGGTATGGAGTCCTGTGTCTACTTAAAAGGATCTGACACAGTGAATCGGAAGCTGTTTCATGATTCTGACTGCAGCAGTCAGCGTTTTCACATTTGTGAACACCAAATATAAACTGCGTAGAAGGAAACGTTTCCTAGTTACCTGTTTTCCAAAAATCCTGCTCTGGATAAACCCCTTCTGATTTTTTGTTAAATCTTTATACATGTCTGCTTTTGGGATTTAAGCTGTACATGCTTGACTGGTGCACCTGTACTTGAgctttttacatttgtttgagtTTCAAGACCTGTTATATGAACATAACCTGTTgagtaaaatatttactaaaattcTTATTTTGTTCATCTTATCTTTAAAGCAATTGTCTGttacataattattatattattataattttataagttTATGTACAAACACTTGAGTACAGTATCACAAATATAATTTCAGTTTACAATTGTTGTAATAAAATGAAGTGtgatcttaataaaaaaaaagaaaaggatttGACAAACACATTCAGAAGTGTTCATTGATAGTGCATAGTGACCAAAATATATACTGTCAATCTGAAAGAGCTTTGATTCTGTTACCATTCACTCACACCCCACAAACCTGTCTgatattatttcttctgttgaacacaaagaatgaataatgttgaataaaatggctattgacttccatagtattttttgttcttaCTGTGGATATCAACGGCTaattttcccaacattcttctaaatatcttgtaTTGTGTTTAGAGCATTTAGAACCACTTGAAA
>TCONS_00071537
GTCTTCACTTTCCATGCTATGCCATGGAAAACGTAAGGAAACAAGCTCATCAATGAACACTTGATTTATATTGTACCGCCACGAATCAGGCTTATAGGCTGACCTCAAGGAATGCAGACCGACAAACTCGCAGAAGATGTGGAGGGAAATCCTGACAGGGTGGATCCCTACCACCAGCAAGGCAAAGTGGCTTGTGCCATGTTCACAGTTCTCCTCCTCTTTTCATTCTTGGTAATAGGAATCGTAACGGGTTTCAACTTCAAGAAGAGTCCACAAGAGGATCAGAACAGAGGTCTTCTTTCTGATGACATCACGCCAATCCCGTTCCAGTATAAAAGTGATAAAGGTCTCTGCTCAGATGGTTGGCTTTTATATAAGAACACCTGTTATTTGTTAGAGAATGTTTATGGGACATGGAAATCCTCAAAGTCTTTATGCCTTAGCCGTGGGGCACATCTGATGGTTGTGGACAGCGAGGAGGAGCTGGAGTTTATTTCAAGAGTTGTTCAGAAATGGACTGACTACTGGATAGGTCTCAAGAGGGACAAAATGGGCAAATGGTTCTGGGTTAATGGAGATGATTATCATTCAAATCTACATTTCTGGGATGAAAATCAGCCTGCTCATGGTGGTATGGAGTCCTGTGTCTACTTAAAAGGATCTGACACAGTGAATCGGAAGCTGTTTCATGATTCTGACTGCAGCAGTCAGCGTTTTCACATTTGTGAACACCAAATATAAACTGCGTAGAAGGAAACGTTTCCTAGTTACCTGTTTTCCAAAAATCCTGCTCTGGATAAACCCCTTCTGATTTTTTGTTAAATCTTTATACATGTCTGCTTTTGGGATTTAAGCTGTACATGCTTGACTGGTGCACCTGTACTTGAgctttttacatttgtttgagtTTCAAGACCTGTTATATGAACATAACCTGTTgagtaaaatatttactaaaattcTTATTTTGTTCATCTTATCTTTAAAGCAATTGTCTGttacataattattatattattataattttataagttTATGTACAAACACTTGAGTACAGTATCACAAATATAATTTCAGTTTACAATTGTTGTAATAAAATGAAGTGtgatcttaataaaaaaaaagaaaagga

Function

symbol description
si:ch211-170d8.8 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CLEC2A (C-type lectin domain family 2 member A) and CD69 (CD69 molecule).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-272 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CLEC2A (C-type lectin domain family 2 member A) and CD69 (CD69 molecule).

Ensembl:

ensembl_id ENSDARG00000090945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071536 False 1721 mRNA 0.41 8 39742459 39760427
TCONS_00071535 False 1861 mRNA 0.40 7 39742459 39760427
TCONS_00071537 True 1132 mRNA 0.38 7 39742739 39754621

Neighbor

gene id symbol gene type direction distance location
XLOC_036634 asgrl1 coding downstream 2819 39733278 ~ 39739640 (-)
XLOC_036632 si:dkey-63d15.12 coding downstream 87790 39650940 ~ 39654669 (-)
XLOC_036631 NA coding downstream 123327 39614757 ~ 39619132 (-)
XLOC_036630 NA coding downstream 431929 39302772 ~ 39310530 (-)
XLOC_036629 NA coding downstream 449785 39275202 ~ 39292674 (-)
XLOC_036636 zgc:162025 coding upstream 56096 39816523 ~ 39822917 (-)
XLOC_036637 ftr98 coding upstream 66771 39827198 ~ 39838660 (-)
XLOC_036638 zgc:174931 coding upstream 79116 39839543 ~ 39847841 (-)
XLOC_036639 unc119.1 coding upstream 88077 39848504 ~ 39859688 (-)
XLOC_036640 CR376731.1 coding upstream 104413 39864840 ~ 39864958 (-)
XLOC_036628 NA non-coding downstream 609821 39131799 ~ 39132638 (-)
XLOC_036626 CR392001.2 non-coding downstream 803499 38938290 ~ 38938960 (-)
XLOC_036645 CR388077.1 non-coding upstream 347458 40107885 ~ 40111658 (-)
XLOC_036656 NA non-coding upstream 1637542 41397969 ~ 41425815 (-)
XLOC_036659 NA non-coding upstream 2023569 41783996 ~ 41784417 (-)
XLOC_036660 NA non-coding upstream 2024046 41784473 ~ 41784773 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_05308075_05312795 NA coding CI01000053 null 5306234 ~ 5312795 (-)