CI01000053_05308075_05312795


Basic Information

Item Value
gene id CI01000053_05308075_05312795
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5306234 ~ 5312795 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_05308075_05312795.mRNA
ATGTGGAGGGAAATCCTGACAGGGTGGATCCCTTCTACCATCAAGGCAAGTAGTATCATTGTAGCTTATTATAGCAGAGACAGTGGCTATGGGCGTTGGCTGCTCATACACTGGGTAAGGGTTTTAAGGCCACCAGGCAAAGTGGCTTGTGTCATGTTCACCGTTCTCCTCCTCCTTTCATTCTTGGTAATAGGAATCGTAACGGGTGTCAACTTCAAGAAGAATTCACAAGAGGATCAGACCAGAGGTCTTCTTTCTGATGATATTACGCCTATCCCATTTCAGATCAAAGGTGATAGAGGGCGCTGCTCGGATGGTTGGGTTTCATATAAGAACACCTGTTATATGTTAGTGAATGTTTATGGGACGTGGGAATTATCACAGTCTTTTTGCCACAACCATGGGGCGCACTTGATGGTTGTGAACAGCGAGGAGGAGCTGGAGTTCATATCAAGATTTGTCCAGAAGCAGACTGACTACTGGATAGGCCTCAAGAGAGACAAAATGGGCAAATGGTCCTGGGTTAATGGAGACGATTATCATTCAGCTCCATATTTCTGGGATGAAAATCAACCTTCTAATGGTGGTATGGAGTCCTGCGCCCATTTAAAAGGAACTGACTCAGTGCATCGCAAGCTGTTGCATGATGCTGACTGTCACAGTGAACACTATCACATTTGTGAACACAAACTAGAGAAAGGCATGTGGTAGGAAACTTTGCCCTTATGCCAGCTGCATTAGCCTGTTCTCCTAAAATCCTGCTATGGACACACACCTTCTTTTTTTGTAAACTGTACTTGTCTGACTGGTGCAAATTCAATGTACTTTTGCTATTCACAAGGCACGTGTAAAGTGCTGTTATATGAACACATCCAATTAGGTAATATTTTCAGTATAATTAGACTTTGTTCAACTCATTTTTGCTATTTAAAATTGTTATATTTAAATATATTTTTAAAGTGTATACTATAAAGTATCTGACAAAGACAGGATTAAAGGGATAGTTCACCCAAAAATGAAAATTTGATGTTTATCTGCTTACCCCCAGGGCATCCAAGATGTACGTGACTTTGTTTCTTCAGAAGAACACAAATTATGATTTTTAACTCCAACCGTTGCGGTCTGTCAGTCGTATAATGCATGGCAATGGTAACACCATATAAGAGTCAAAAAAACATGCACAGACAAATCCAAATTAAACCCTGCGGCTCGTGACGACACATTGATGTTCTAAGACACGAAACGATCGGTTTGTGCGAGAAACCGAACAGTATTTATATAATTTTTTACCTCAAATACACCACTATGTCCAACTGCCTTGACACACGCACGGCATCCAGTGCGTGAGGTGTGTACGCGCTCTGGTGTAATTTAAAGGATTAGTTCACTTTCAAATAAAATTTTCCTGATAATTTACTCACCCCCATGTCATCCAAGATGTTCATGTCTTTCTTTCTTTGGTCAAAAAGAAATTAAGGTTTTTGATGAAAACATCCAGGATTATTCTCCTTATAGTGGACTTCAATGGTCTCTCCAAACGGTTTTACAGTTTCAGTGCAGCTTCAAAGGGCTTTAAACGATACCAGACGAAGAATAAGGGTCTTATCTAGCGAAACGATCATCATTTTCTAAAAAAATACAACTGTATATGCTTTATAAACACAAATGATCGCCTTGCACGTAGACGTAGGACAGGCGTAGGACATACAGCATAAGCTTTTTGAAGAATACGGAAAGCGGAAGCACGTGCAAGGCGATCAATTTTAAAGAACCCTTTATTCAAAAAAGTTTCTATGTAAGGATAATTTGCATAATACTTTCATGTTTAATTAAATTTTTTTGTAGGATAAAGTATGTTTATACATCTAATTTGTAAGATGTTATTCAAAATAAAATAAAAAAACATAATTAATTAAAATTAAATCCATAAAATGGTTATATGGGAACCCCTAAAATTTTCTAGATATGAAGCAGTCTTTACTTCAGTCTTCAGTGTCACATGATCTTTTATCAATGTTAAAAACAGTTGTGTTGCTTAAACCTTTTTGTGGAAACCATGCTACAATTTTTTCAGGAATCTTTGATGAATAGAAAGTTCAAAAGAACAGGATTTATTTAAGATTGAGTTAATCAGTAATTTCTTAACTCAATATTTTGTCATATTTCACACATGTGAGGATGCAAATGTTATGAAAAGTCCAACAGGATGTTAGGACTGTCAATTCCGCTATCGGAAATGGTTTAGGAGTCGTTGCGTAAGGACAGAATGACAGAAAAACAGCCATCAGGACACTGACTGCAGCAGAGGAGGGAGATTCGACAGAAAGACTTCACTTTAAACAGTAAGATTCACTGCATTTGAGAGTTATTTTTTTTTTAATTTGTATTTTTCACATAAAATCATATTGTCTTCAGTGTATGAAACTTCATGGTAAAATCTTAATTTGTTGGCAATTAGTATGTTTTACAGTTTTCATGGTCTTTTAAGAATATGTTTGATGTCTTCGGTTTGGTTTTGTGTATTTTAACTGTAACGTATGTCAGATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_05308075_05312795.mRNA True 2552 mRNA 0.37 6 5306234 5312795

Neighbor

gene id symbol gene type direction distance location
CI01000053_05302453_05304313 NA coding downstream 1921 5302199 ~ 5304313 (-)
CI01000053_05221746_05223262 NA coding downstream 82972 5220750 ~ 5223262 (-)
CI01000053_05102710_05104285 NA coding downstream 201744 5100597 ~ 5104490 (-)
CI01000053_04834397_04836861 NA coding downstream 469007 4834066 ~ 4837227 (-)
CI01000053_04703670_04706744 CRYBB2 coding downstream 599225 4703535 ~ 4707009 (-)
CI01000053_05351273_05356701 NA coding upstream 38329 5351124 ~ 5356701 (-)
CI01000053_05369264_05372918 UNC119B, UNC119.1 coding upstream 56169 5368964 ~ 5372918 (-)
CI01000053_05378213_05386176 NA coding upstream 64515 5377310 ~ 5386613 (-)
CI01000053_05390157_05393405 NA coding upstream 77228 5390023 ~ 5393405 (-)
CI01000053_05416830_05423957 ASPHD2 coding upstream 102949 5415744 ~ 5424697 (-)
G228463 NA non-coding downstream 4580 5256104 ~ 5301654 (-)
G228475 NA non-coding downstream 111943 5191415 ~ 5194291 (-)
G228497 NA non-coding downstream 123810 5182160 ~ 5182424 (-)
G228494 NA non-coding downstream 126701 5179306 ~ 5179533 (-)
G228493 NA non-coding downstream 126990 5178990 ~ 5179244 (-)
G228533 NA non-coding upstream 117715 5430510 ~ 5430978 (-)
G228544 NA non-coding upstream 158537 5471332 ~ 5486136 (-)
G228554 NA non-coding upstream 173655 5486450 ~ 5486705 (-)
G228557 NA non-coding upstream 178622 5491417 ~ 5491719 (-)
G228558 NA non-coding upstream 180597 5493392 ~ 5493639 (-)
G227604 NA other downstream 1218494 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 1753263 3550333 ~ 3552847 (-)
G226963 NA other downstream 2308966 2996717 ~ 2997268 (-)
G226826 NA other downstream 2739162 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 3068838 2225210 ~ 2226481 (-)
G228651 NA other upstream 471688 5784483 ~ 5787690 (-)
G228750 NA other upstream 618797 5931592 ~ 5932241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036635 si:ch211-170d8.8 coding NC_007119.7 CM002892.2 39742459 ~ 39760427 (-)