CI01000053_05102710_05104285


Basic Information

Item Value
gene id CI01000053_05102710_05104285
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5100597 ~ 5104490 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_05102710_05104285.mRNA
ACACAGCTGTCCATATGTGGACATTCAATCTACCCTTGTTGAGGGTTTCAGTATTGTACAAACACCAGAACATACCCACAGCTTACCAAGAAGACAATGAAAAATATGAGCTTATAGAATTTTGGCTCAGTGAGTGATGAAAAGGAGGGAAAAGTGTGTGCGTGCACAGGTTCTCAGATGCCTGCGAGAGAAATCCGTCCACAGCATGGGATCAAAAAGAGTGAGAGAAAAAGGAGGAAAGAGCCTGTTGATGATGATGAACCTTTGCAGAACTTTCCTGCTGGCCACAGCACTGCGGCCCTGTTCATCCCAGTCCCCAAACCCAGCCGACTGCAACCCATCATTCTCTGACAGCCTGCCTCTACGCTGCTTACAGCCCACTCTCGCCTCTCGCTGCACTCACATATACAAGGCTGGAGAGAAGCTACAGGAGATGGTCTCGCAATTCAGACTTGTTCCCAATGAGTGTTGGACTCCACCAGGGCTGTCCCTTGTCTCAAATTCTGTCTGTGGTATTCATGGACAGGATCTCAAGGCGCAGCAGGAGGCGGGGGTTGTCCAGTTTGGGGTCCTTAGGGTGGCATCGCTGCTATTTGTGGATGATGTTGTCCTGATGGCCTTGTCGGGCTGTGACCTCCAGCGCTTACTTGAGTGGTTTGTGACCAAGTGTGAAGTGGTGAGAATGAGAGTCAGCACCTCCAAATCCAGAAAAAAGGTGGATTGTGCACTCTGGCTAGGGAGTGATTTGCTTCCCCAAATGGAGGAGTTCAAGTATCTCAGGGTCTTGTTCACAAGTGAGGATAGCTTGGAGCAGGAGTTTGATAGGCGGATTGGTATGGCAGCAGCACTAATGTGGCTGTTGTACTGGGCCGTTGTAGTCTTCGCCTGAAGTGCTCGATTTACCCGTTGATCTGTATTCCAAAACTCATCTATGGTCATGAACTCTGGGTAGTGACTGAAAGAATGAGATTATGGGTACAAGAAGCTGAAATGAGTTTTCTCCGCAGGGTCGATGGGCTAACCTTTAGGCCATGTGTCCATCAAAGCATTTTTTTCTGAGGCTAGCGTATTGTTTTCAACGGAAGCGCCGCATTTTTAAAACGGCAGGAGCGCAATGAGGCACTGAGTGTCTATTTCACGCTGAAGCGTTGGGTTGAAGAATGTGAACTTTGGGTAAAACGCAGCACTCATCACGGTCACTTTCCATCCAATCACAGTGGAGGAAGGGCGGGACAAATACAACACCCACCAACCACCACATTCTGCTTGTACACGTCAACAGATGACAACAACAAGCATAATAACGTAACAAAATAATTTAAAACAAGAGCCAGAGCAAATACTTTACATCATATCGACATTTTTATTACAAAACAGTACAGAAACAAACTATCTGTGAAATAAGATACTAGTAACACTTCTGCGGATATTCCGTATCATAGCAAGCAAAGCATCTCAACTGAAAAAAAAAAAAAGTTGCGCTGCCAAAGCGCTCTCAAGAGCTCACAGCTAGGAGTTTTCAGCAGAGCGCAGCTAGCTAAAAACGCTTTGGCGGAAACACGGCCTTAGAGACAGGGTGCAAAACCCTGATATTAAGAAGGGACTTAGAGTAGAGCCGCTGCTCCTTCTCATTGAAAGGAGCCAGTTGAGGTGGTTTAGGCAGCTGGTCCTTATTCCTCTCGGACGCCTTCCAGTGGAGGCAATCCGGGTATGTCCAACTGGGAAGAGACCCTAGGGAACACTAGAGGGATTATATCGCCTGACTGGCCTTGGGATCCCCCAAGAAGAGTTGGAGGAAGTAGCTTGGATAAGGACATGTGGGCAGCCCTTCTTAGCCTGCTGCTATATTAATTATATTACATTATATTATATTATATTATTATGGCCCAGTTTTACAGACAGGGCTTAGCCTAAGCCAGGATTAAGCCTTAGTTCATTTAGGATATTTTAGTAGGTTTTATAATAGTACACTAGAAAAAAAACATTGCTGGTGTACATCTTGAGACAAAACAATGGCACTGACATGTTTTAAGATATGTCAGTACAAATTGCTTTCAGTTAAAACAGCTCAAACATGCATTTTAGTCTAGGACTAGTTTAAGCCTTGTCTGTGAAACCGGGGTTGAATTATATTATATCACTAACTAAAATCTATCAAAACAGCAACTTTTGATAACGTACAGTAAAAGTAGTCTTAGGAATGCATTTTTTTTTTCTTCAGTGCCTTTTTTCATCTTCCCATAGATGTCTGTGTTTTGTTAGAACAAGCTTTACTGTGGACTTTAGCTCCTGCTGTTCCTTTATCTCTGCTTTCCAGTTTACCTTTATCAAAGCCTTCCTCAACACTGTCTGGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGACCTCATGTCTGATTGTCTGGGTGTGGGCTGAAAATAGTGTTGTGGTGGATTGGTATGTTTAAGTGTGGATTAAATAGCACTTTATTTCCCATCCAACTCTTTTTCGTAAAGCGAGCACTAAAAATTGACTCTAAACTCGAAAGTGGTTCCAGAAGGTATTGGTACTGACCTAAACAATGAATGTTCAACAGAATATTTGCTGTTACAAATAGGACAGATGAGATTGGATTGGTGGCTAGACTGTCTTTGCTTAAAGTGAAACCCTAGCTGAACAATTCTTTTTTTAATTTATTACATCAAACAGTATTTTATTGCGCACTGTTTAGAATTCAGCATTAATTACCTGTGAGTTTATTTTGCTATTTGTCAAACATTTTTGAATGTTGACTGACAGAAATTTATGACAAGCTAAACAGAAAAATGTCAACAGTGGGTTGTTCAGCTGTGATGTACCTCATGAATTTTATAAGGTTAGCCTGTCTAAAAATATACTGTTGTGGGGTTTCTTGTCTTGTTCGTTCTGCTGTCGCACAATGTAATCAAAGTAGGTTTTGGCACTTGGATTTTTGACAAGACGTGAGCTGTTGTCAACCAATAAA
>TU258962
CAAAACAATGGCACTGACATGTTTTAAGATATGTCAGTACAAATTGCTTTCAGTTAAAACAGCTCAAACATGCATTTTAGTCTAGGACTAGTTTAAGCCTTGTCTGTGAAACCGGGGTTGAATTATATTATATCACTAACTAAAATCTATCAAAACAGCAACTTTTGATAACGTACAGTAAAAGTAGTCTTAGGAATGCATTTTTTTTTTCTTCAGTGCC

Function

NR:

description
hypothetical protein EH28_15245

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_05102710_05104285.mRNA False 3002 mRNA 0.43 3 5100597 5104490
TU258962 True 220 lncRNA 0.33 1 5101374 5101593

Neighbor

gene id symbol gene type direction distance location
CI01000053_04834397_04836861 NA coding downstream 263370 4834066 ~ 4837227 (-)
CI01000053_04703670_04706744 CRYBB2 coding downstream 393588 4703535 ~ 4707009 (-)
CI01000053_04642167_04642450 NA coding downstream 457432 4641841 ~ 4643165 (-)
CI01000053_04514278_04540909 NA coding downstream 559688 4513565 ~ 4540909 (-)
CI01000053_04494346_04508379 KCNIP3A, KCNIP3 coding downstream 591957 4494322 ~ 4508640 (-)
CI01000053_05221746_05223262 NA coding upstream 116260 5220750 ~ 5223262 (-)
CI01000053_05302453_05304313 NA coding upstream 197709 5302199 ~ 5304313 (-)
CI01000053_05308075_05312795 NA coding upstream 201744 5306234 ~ 5312795 (-)
CI01000053_05351273_05356701 NA coding upstream 246634 5351124 ~ 5356701 (-)
CI01000053_05369264_05372918 UNC119B, UNC119.1 coding upstream 264474 5368964 ~ 5372918 (-)
G228189 NA non-coding downstream 13811 5086487 ~ 5086786 (-)
G228173 NA non-coding downstream 62796 5037578 ~ 5037801 (-)
G228172 NA non-coding downstream 63037 5037218 ~ 5037560 (-)
G228150 NA non-coding downstream 98923 5001378 ~ 5001674 (-)
G228143 NA non-coding downstream 112940 4987365 ~ 4987657 (-)
G228210 NA non-coding upstream 656 5105146 ~ 5105478 (-)
G228220 NA non-coding upstream 18639 5123129 ~ 5123442 (-)
G228229 NA non-coding upstream 35292 5139782 ~ 5140005 (-)
G228247 NA non-coding upstream 57063 5161553 ~ 5161821 (-)
G228479 NA non-coding upstream 60794 5165284 ~ 5165498 (-)
G227604 NA other downstream 1012857 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 1547626 3550333 ~ 3552847 (-)
G226963 NA other downstream 2103329 2996717 ~ 2997268 (-)
G226826 NA other downstream 2533525 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 2863201 2225210 ~ 2226481 (-)
G228651 NA other upstream 679993 5784483 ~ 5787690 (-)
G228750 NA other upstream 827102 5931592 ~ 5932241 (-)

Expression


Co-expression Network