CI01000053_05351273_05356701


Basic Information

Item Value
gene id CI01000053_05351273_05356701
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5351124 ~ 5356701 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_05351273_05356701.mRNA
GAGACGGCAGCCAGGAACTTCTTTGAGTCTGTGTTGAATACCGCCAAGCTTCAGACACGTCTAAAAAGATCTGCAAAAAGCTTCAGACCTAAAACAAAAGAAAAAAAAGGAGAAAACAACGACAGACAAAGTCGTAGAGTCGATGTTTCAAAGCATGAACATGATGGGAATGAGCTCGGGACAACACCAGAGTTTCAATCCCATGTGGCAAAAAAGTTAGGAGCCATATTGGACGGGTGCATTTCAGAAGTGTTTTCTGAGACTTTTGACTCAGAACCTGGTCAGTCCAAAAACAGAGATGAAGAAGACAATGAGGAAGGTTTCCGTCTGTTCTCCACATCTGCCTCTGGAAAATGGGAGGAACAATCACCTCCTCCACCTCCTAAAAGAAGACCAATTTCCAGCTCTAGTGACAGTGACAGTGAGATGGAGATGAGGCTCAGAGAAGCTGCTGTGTCTGTGTCAGACATCCTCGGCCCTTTAACCCAAACTGTCACAGAGACGACAGACAGGAAAAGTATGGCAAACGTAGAGCCTGGAAAAGAGGACACAGTCACAAAAAAGACCAAGAAAAAGAAGAAAAGAAAAACATCCACAGAGGGAAGTGAGGAGAAACGTATTCATGTGTCAGAGAAACAGTCTAATGGAGAAGCAACAGGAGCACAAACAGCTGTTGTAGAGAATTTGACAAAGAAAAAGAAGAAAAAGAAAAGAAAAAAGTTGGAGGAGGTCAAAAAAGGCGATGATGAATGAAAGACTTTATTGTTTGAAATAGTAATTGTTCTGTTAATTATGTTTTATGAACTTTAATAGTTGACTGCAAAGTTAAGTTTCTTGACCAGTTTCCTGTTTTTTGAGAATTTAGCATTTTCATGCTATAAATCCACCAAAATATCAATAAA

Function

NR:

description
Zgc:162025 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_05351273_05356701.mRNA True 902 mRNA 0.40 6 5351124 5356701

Neighbor

gene id symbol gene type direction distance location
CI01000053_05308075_05312795 NA coding downstream 38329 5306234 ~ 5312795 (-)
CI01000053_05302453_05304313 NA coding downstream 46811 5302199 ~ 5304313 (-)
CI01000053_05221746_05223262 NA coding downstream 127862 5220750 ~ 5223262 (-)
CI01000053_05102710_05104285 NA coding downstream 246634 5100597 ~ 5104490 (-)
CI01000053_04834397_04836861 NA coding downstream 513897 4834066 ~ 4837227 (-)
CI01000053_05369264_05372918 UNC119B, UNC119.1 coding upstream 12263 5368964 ~ 5372918 (-)
CI01000053_05378213_05386176 NA coding upstream 20609 5377310 ~ 5386613 (-)
CI01000053_05390157_05393405 NA coding upstream 33322 5390023 ~ 5393405 (-)
CI01000053_05416830_05423957 ASPHD2 coding upstream 59043 5415744 ~ 5424697 (-)
CI01000053_05452721_05459354 GGT1A, GGT1B, GGT1 coding upstream 95563 5452264 ~ 5459354 (-)
G228463 NA non-coding downstream 49470 5256104 ~ 5301654 (-)
G228475 NA non-coding downstream 156833 5191415 ~ 5194291 (-)
G228497 NA non-coding downstream 168700 5182160 ~ 5182424 (-)
G228494 NA non-coding downstream 171591 5179306 ~ 5179533 (-)
G228493 NA non-coding downstream 171880 5178990 ~ 5179244 (-)
G228533 NA non-coding upstream 73809 5430510 ~ 5430978 (-)
G228544 NA non-coding upstream 114631 5471332 ~ 5486136 (-)
G228554 NA non-coding upstream 129749 5486450 ~ 5486705 (-)
G228557 NA non-coding upstream 134716 5491417 ~ 5491719 (-)
G228558 NA non-coding upstream 136691 5493392 ~ 5493639 (-)
G227604 NA other downstream 1263384 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 1798153 3550333 ~ 3552847 (-)
G226963 NA other downstream 2353856 2996717 ~ 2997268 (-)
G226826 NA other downstream 2784052 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 3113728 2225210 ~ 2226481 (-)
G228651 NA other upstream 427782 5784483 ~ 5787690 (-)
G228750 NA other upstream 574891 5931592 ~ 5932241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036636 zgc:162025 coding NC_007119.7 CM002892.2 39816523 ~ 39822917 (-)