RNA id: CI01000053_05102710_05104285.mRNA


Basic Information

Item Value
RNA id CI01000053_05102710_05104285.mRNA
length 3002
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000053_05102710_05104285
representative False

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5100597 ~ 5104490 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACAGCTGTCCATATGTGGACATTCAATCTACCCTTGTTGAGGGTTTCAGTATTGTACAAACACCAGAACATACCCACAGCTTACCAAGAAGACAATGAAAAATATGAGCTTATAGAATTTTGGCTCAGTGAGTGATGAAAAGGAGGGAAAAGTGTGTGCGTGCACAGGTTCTCAGATGCCTGCGAGAGAAATCCGTCCACAGCATGGGATCAAAAAGAGTGAGAGAAAAAGGAGGAAAGAGCCTGTTGATGATGATGAACCTTTGCAGAACTTTCCTGCTGGCCACAGCACTGCGGCCCTGTTCATCCCAGTCCCCAAACCCAGCCGACTGCAACCCATCATTCTCTGACAGCCTGCCTCTACGCTGCTTACAGCCCACTCTCGCCTCTCGCTGCACTCACATATACAAGGCTGGAGAGAAGCTACAGGAGATGGTCTCGCAATTCAGACTTGTTCCCAATGAGTGTTGGACTCCACCAGGGCTGTCCCTTGTCTCAAATTCTGTCTGTGGTATTCATGGACAGGATCTCAAGGCGCAGCAGGAGGCGGGGGTTGTCCAGTTTGGGGTCCTTAGGGTGGCATCGCTGCTATTTGTGGATGATGTTGTCCTGATGGCCTTGTCGGGCTGTGACCTCCAGCGCTTACTTGAGTGGTTTGTGACCAAGTGTGAAGTGGTGAGAATGAGAGTCAGCACCTCCAAATCCAGAAAAAAGGTGGATTGTGCACTCTGGCTAGGGAGTGATTTGCTTCCCCAAATGGAGGAGTTCAAGTATCTCAGGGTCTTGTTCACAAGTGAGGATAGCTTGGAGCAGGAGTTTGATAGGCGGATTGGTATGGCAGCAGCACTAATGTGGCTGTTGTACTGGGCCGTTGTAGTCTTCGCCTGAAGTGCTCGATTTACCCGTTGATCTGTATTCCAAAACTCATCTATGGTCATGAACTCTGGGTAGTGACTGAAAGAATGAGATTATGGGTACAAGAAGCTGAAATGAGTTTTCTCCGCAGGGTCGATGGGCTAACCTTTAGGCCATGTGTCCATCAAAGCATTTTTTTCTGAGGCTAGCGTATTGTTTTCAACGGAAGCGCCGCATTTTTAAAACGGCAGGAGCGCAATGAGGCACTGAGTGTCTATTTCACGCTGAAGCGTTGGGTTGAAGAATGTGAACTTTGGGTAAAACGCAGCACTCATCACGGTCACTTTCCATCCAATCACAGTGGAGGAAGGGCGGGACAAATACAACACCCACCAACCACCACATTCTGCTTGTACACGTCAACAGATGACAACAACAAGCATAATAACGTAACAAAATAATTTAAAACAAGAGCCAGAGCAAATACTTTACATCATATCGACATTTTTATTACAAAACAGTACAGAAACAAACTATCTGTGAAATAAGATACTAGTAACACTTCTGCGGATATTCCGTATCATAGCAAGCAAAGCATCTCAACTGAAAAAAAAAAAAAGTTGCGCTGCCAAAGCGCTCTCAAGAGCTCACAGCTAGGAGTTTTCAGCAGAGCGCAGCTAGCTAAAAACGCTTTGGCGGAAACACGGCCTTAGAGACAGGGTGCAAAACCCTGATATTAAGAAGGGACTTAGAGTAGAGCCGCTGCTCCTTCTCATTGAAAGGAGCCAGTTGAGGTGGTTTAGGCAGCTGGTCCTTATTCCTCTCGGACGCCTTCCAGTGGAGGCAATCCGGGTATGTCCAACTGGGAAGAGACCCTAGGGAACACTAGAGGGATTATATCGCCTGACTGGCCTTGGGATCCCCCAAGAAGAGTTGGAGGAAGTAGCTTGGATAAGGACATGTGGGCAGCCCTTCTTAGCCTGCTGCTATATTAATTATATTACATTATATTATATTATATTATTATGGCCCAGTTTTACAGACAGGGCTTAGCCTAAGCCAGGATTAAGCCTTAGTTCATTTAGGATATTTTAGTAGGTTTTATAATAGTACACTAGAAAAAAAACATTGCTGGTGTACATCTTGAGACAAAACAATGGCACTGACATGTTTTAAGATATGTCAGTACAAATTGCTTTCAGTTAAAACAGCTCAAACATGCATTTTAGTCTAGGACTAGTTTAAGCCTTGTCTGTGAAACCGGGGTTGAATTATATTATATCACTAACTAAAATCTATCAAAACAGCAACTTTTGATAACGTACAGTAAAAGTAGTCTTAGGAATGCATTTTTTTTTTCTTCAGTGCCTTTTTTCATCTTCCCATAGATGTCTGTGTTTTGTTAGAACAAGCTTTACTGTGGACTTTAGCTCCTGCTGTTCCTTTATCTCTGCTTTCCAGTTTACCTTTATCAAAGCCTTCCTCAACACTGTCTGGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGACCTCATGTCTGATTGTCTGGGTGTGGGCTGAAAATAGTGTTGTGGTGGATTGGTATGTTTAAGTGTGGATTAAATAGCACTTTATTTCCCATCCAACTCTTTTTCGTAAAGCGAGCACTAAAAATTGACTCTAAACTCGAAAGTGGTTCCAGAAGGTATTGGTACTGACCTAAACAATGAATGTTCAACAGAATATTTGCTGTTACAAATAGGACAGATGAGATTGGATTGGTGGCTAGACTGTCTTTGCTTAAAGTGAAACCCTAGCTGAACAATTCTTTTTTTAATTTATTACATCAAACAGTATTTTATTGCGCACTGTTTAGAATTCAGCATTAATTACCTGTGAGTTTATTTTGCTATTTGTCAAACATTTTTGAATGTTGACTGACAGAAATTTATGACAAGCTAAACAGAAAAATGTCAACAGTGGGTTGTTCAGCTGTGATGTACCTCATGAATTTTATAAGGTTAGCCTGTCTAAAAATATACTGTTGTGGGGTTTCTTGTCTTGTTCGTTCTGCTGTCGCACAATGTAATCAAAGTAGGTTTTGGCACTTGGATTTTTGACAAGACGTGAGCTGTTGTCAACCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258945 lncRNA downstream 13811 5086487 ~ 5086786 (-) True G228189
TU258927 lncRNA downstream 62796 5037578 ~ 5037801 (-) True G228173
TU258926 lncRNA downstream 63037 5037218 ~ 5037560 (-) True G228172
TU258901 lncRNA downstream 98923 5001378 ~ 5001674 (-) True G228150
TU258894 lncRNA downstream 112940 4987365 ~ 4987657 (-) True G228143
TU258966 lncRNA upstream 656 5105146 ~ 5105478 (-) True G228210
TU258976 lncRNA upstream 18639 5123129 ~ 5123442 (-) True G228220
TU258985 lncRNA upstream 35292 5139782 ~ 5140005 (-) True G228229
TU259003 lncRNA upstream 57063 5161553 ~ 5161821 (-) True G228247
TU259295 lncRNA upstream 60794 5165284 ~ 5165498 (-) True G228479
CI01000053_04834397_04836861.mRNA mRNA downstream 263370 4834066 ~ 4837227 (-) True CI01000053_04834397_04836861
CI01000053_04703670_04706744.mRNA mRNA downstream 393588 4703535 ~ 4707009 (-) True CI01000053_04703670_04706744
CI01000053_04642167_04642450.mRNA mRNA downstream 457432 4641841 ~ 4643165 (-) True CI01000053_04642167_04642450
CI01000053_04514278_04540909.mRNA mRNA downstream 559688 4513565 ~ 4540909 (-) True CI01000053_04514278_04540909
CI01000053_04494346_04508379.mRNA mRNA downstream 591957 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
CI01000053_05221746_05223262.mRNA mRNA upstream 116260 5220750 ~ 5223262 (-) True CI01000053_05221746_05223262
CI01000053_05302453_05304313.mRNA mRNA upstream 197709 5302199 ~ 5304313 (-) True CI01000053_05302453_05304313
CI01000053_05308075_05312795.mRNA mRNA upstream 201744 5306234 ~ 5312795 (-) True CI01000053_05308075_05312795
CI01000053_05351273_05356701.mRNA mRNA upstream 246634 5351124 ~ 5356701 (-) True CI01000053_05351273_05356701
CI01000053_05369264_05372918.mRNA mRNA upstream 264474 5368964 ~ 5372918 (-) True CI01000053_05369264_05372918
TU258305 other downstream 1012857 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 1547626 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 1548619 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 1548619 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2103329 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 679993 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 827102 5931592 ~ 5932241 (-) True G228750

Expression Profile