RNA id: TU258926


Basic Information

Item Value
RNA id TU258926
length 343
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G228172
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5037218 ~ 5037560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACGTGACATTGTTTGCAACACTGATTGAACTGATGTGATACAGAATTCGGTAAGCTACTGTATCTTTCAACATATTTTCTGATTTTCATTCATGTTTATTTCGTTCTGTACAGTAGTAAAGAGGAAAGGATGATCGCGTTCACTCACGATCCTCGACAAGTGTTCAAAATGAAAAGTGACGCAGTCTTTGATCAACTTTCTTTTCATAATATAAATGAATGCATAGCCTATGCCTATTTGCTTATCCTGTAAGTTCGTGAATAAAAATGAAAATGTGGACGAAATCAGAAGCTATTAAATGTATTATTATTAAAATATAAAAATTAAAGTGACGGGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258901 lncRNA downstream 35544 5001378 ~ 5001674 (-) True G228150
TU258894 lncRNA downstream 49561 4987365 ~ 4987657 (-) True G228143
TU258893 lncRNA downstream 51336 4985673 ~ 4985882 (-) True G228142
TU258846 lncRNA downstream 54584 4973704 ~ 4982634 (-) True G228095
TU258888 lncRNA downstream 71800 4965092 ~ 4965418 (-) True G228137
TU258927 lncRNA upstream 18 5037578 ~ 5037801 (-) True G228173
TU258945 lncRNA upstream 48927 5086487 ~ 5086786 (-) True G228189
TU258962 lncRNA upstream 63814 5101374 ~ 5101593 (-) True CI01000053_05102710_05104285
TU258966 lncRNA upstream 67586 5105146 ~ 5105478 (-) True G228210
TU258976 lncRNA upstream 85569 5123129 ~ 5123442 (-) True G228220
CI01000053_04834397_04836861.mRNA mRNA downstream 199991 4834066 ~ 4837227 (-) True CI01000053_04834397_04836861
CI01000053_04703670_04706744.mRNA mRNA downstream 330209 4703535 ~ 4707009 (-) True CI01000053_04703670_04706744
CI01000053_04642167_04642450.mRNA mRNA downstream 394053 4641841 ~ 4643165 (-) True CI01000053_04642167_04642450
CI01000053_04514278_04540909.mRNA mRNA downstream 496309 4513565 ~ 4540909 (-) True CI01000053_04514278_04540909
CI01000053_04494346_04508379.mRNA mRNA downstream 528578 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
CI01000053_05102710_05104285.mRNA mRNA upstream 63037 5100597 ~ 5104490 (-) False CI01000053_05102710_05104285
CI01000053_05221746_05223262.mRNA mRNA upstream 183190 5220750 ~ 5223262 (-) True CI01000053_05221746_05223262
CI01000053_05302453_05304313.mRNA mRNA upstream 264639 5302199 ~ 5304313 (-) True CI01000053_05302453_05304313
CI01000053_05308075_05312795.mRNA mRNA upstream 268674 5306234 ~ 5312795 (-) True CI01000053_05308075_05312795
CI01000053_05351273_05356701.mRNA mRNA upstream 313564 5351124 ~ 5356701 (-) True CI01000053_05351273_05356701
TU258305 other downstream 949478 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 1484247 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 1485240 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 1485240 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2039950 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 746923 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 894032 5931592 ~ 5932241 (-) True G228750

Expression Profile