RNA id: CI01000053_05221746_05223262.mRNA



Basic Information


Item Value
RNA id CI01000053_05221746_05223262.mRNA
length 1719
RNA type mRNA
GC content 0.35
exon number 6
gene id CI01000053_05221746_05223262
representative True

Chromosome Information


Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5220750 ~ 5223262 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGACTTGCACCAGTCTTACTGCTCTTTTCGCAACCATCTGGTTCACAGGTCTCGTCTCTGGAGGTTTAACTTTGCCAAATTCAGGCATATCTGTGTGGCAAAAACCTGAGATGATAAAATGGAAAGGCACAAGTGAGAGCATCACCTGTCACATTAAAGCTCAATCACAAGTTAAAAGAATCATGGTTAAGTGGTTGCAAGATGTGTTTGTTAACGCATTACTGGACCTGCTGTCAATGCGTCTGAATCATAGTGGCATGTATTACTGCAATGCACAGATGGATTTACCTGTACTTGGACCTGTTGAATATGGAAATGGGACGAATGTATATGTGGACTATATACTCAACACAATATTTTGGTGCTTAAAAAGCCAGAGCAATCCAAAAGTTAAACATGTATACTTCTCACTTATAACATTTGCAGTGTCTAATTCAACAACTGTGACAGCACCTACTCCCACTCCTGTGACTGTGACAGCAAACTTCTATGATGACAAATTTATGGTGTCATTGACTTTAGGATTGGGCTGTGTCTTGCTAATCATCTGCATTGTCTGTGTTATTCACATACATTATAAAGCATTAAACATTCCTCGAGACAGTGTGAAATCAAGAAATGAGAACAGTGCAGCTCTGGCACTCACTTCAGTGACCTACACTGAGGACTCAGTGACATACTCTGAGGTCCACATAAAGAATGGACCAAAGGATGAAGGTTGAGCATCATTTTATTCACACTATAATGCATATGGGACAGGGTGTTACTGACAGTCTTTTAATGGGACTTTAAGCTTCTAGTCCTGTTAGATTTTGTCAAGGTATTGCTGTAAATACTGTAAATGTTGATATAGTTTTCAATGGTTTGTGTTTCTTCACGAAGACCGAAATGTTAAGTGCCGTCGGCTCACATTTGAGTCTGTTTTAAGCAGTATTGCGCTCAAGGCAAGTGTATATATTTAAGATATGATTATAAAAAAATTCTCTGACAAAAACTTCAGACTTTTTCTTGTCTTTTGAGTGATCAGCTTAGAGTTTAGGTAGTGATGCTTGGACATACAGTCAAACCAAAAATTATTCAGACATTTTTGATATATTTTTACTAGTGGGTGCAGGACACTATAGTTCATTTATGTAAGTGAGGATAGCAAAATAAATTGTGACATATTATACCCAAAAATTCTTCATACAGTGGACTACCGGTAAAATTGATAAAAATTTGGAACCAAAAATGATTGACACTTTGACCTGACCGTGTTTTGCTTAAGTGTTATCTGACATAATTAAGATTCATTTTTTCTGACACAGTTTAACTCTGAGATCTTGTCATATTTTATTACCATTTTTTTTAAACTATAGTGAATAAACTGAATTAATTAATGAAATGTTCAAGGTGTCTGAATAAATTTAGGTTTGACTGTATTTTTATTGGATTCTATAAAAGGTGCCTGTCAAATTGATATGCAACCTCATGGAACGGCGAAATGATGTTTTGCAAGCGGTTTATTTGTCAGGGCTTTCGTTTTTAGACTAGCTTTAGGTGCACTGAAAAGAAACTGTTTCAAAATGATTTTATATAGGAATTAGCCTGCAAGCAAACAAAAGAGAAAGAGAGAAAATGTAGTGTGACAGCTCAGTGGTATTCTAATATTTTGGTTTTCATATCAGTTAATAATATGCAAATTTTTTATAGCAATAAGCGTCATACAAGAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU259291 lncRNA downstream 26459 5191415 ~ 5194291 (-) True G228475
TU259313 lncRNA downstream 38326 5182160 ~ 5182424 (-) True G228497
TU259310 lncRNA downstream 41217 5179306 ~ 5179533 (-) True G228494
TU259309 lncRNA downstream 41506 5178990 ~ 5179244 (-) True G228493
TU259308 lncRNA downstream 41769 5178656 ~ 5178981 (-) True G228492
TU259267 lncRNA upstream 32842 5256104 ~ 5301654 (-) False G228463
TU259266 lncRNA upstream 43728 5266990 ~ 5301654 (-) False G228463
TU259262 lncRNA upstream 44926 5268188 ~ 5301654 (-) True G228463
TU259349 lncRNA upstream 207248 5430510 ~ 5430978 (-) True G228533
TU259361 lncRNA upstream 248070 5471332 ~ 5486136 (-) True G228544
CI01000053_05102710_05104285.mRNA mRNA downstream 116260 5100597 ~ 5104490 (-) False CI01000053_05102710_05104285
CI01000053_04834397_04836861.mRNA mRNA downstream 383523 4834066 ~ 4837227 (-) True CI01000053_04834397_04836861
CI01000053_04703670_04706744.mRNA mRNA downstream 513741 4703535 ~ 4707009 (-) True CI01000053_04703670_04706744
CI01000053_04642167_04642450.mRNA mRNA downstream 577585 4641841 ~ 4643165 (-) True CI01000053_04642167_04642450
CI01000053_04514278_04540909.mRNA mRNA downstream 679841 4513565 ~ 4540909 (-) True CI01000053_04514278_04540909
CI01000053_05302453_05304313.mRNA mRNA upstream 78937 5302199 ~ 5304313 (-) True CI01000053_05302453_05304313
CI01000053_05308075_05312795.mRNA mRNA upstream 82972 5306234 ~ 5312795 (-) True CI01000053_05308075_05312795
CI01000053_05351273_05356701.mRNA mRNA upstream 127862 5351124 ~ 5356701 (-) True CI01000053_05351273_05356701
CI01000053_05369264_05372918.mRNA mRNA upstream 145702 5368964 ~ 5372918 (-) True CI01000053_05369264_05372918
CI01000053_05378213_05386176.mRNA mRNA upstream 154048 5377310 ~ 5386613 (-) True CI01000053_05378213_05386176
TU258305 other downstream 1133010 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 1667779 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 1668772 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 1668772 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2223482 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 561221 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 708330 5931592 ~ 5932241 (-) True G228750

Expression Profile