RNA id: CI01000053_04703670_04706744.mRNA


Basic Information

Item Value
RNA id CI01000053_04703670_04706744.mRNA
length 1027
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000053_04703670_04706744
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 4703535 ~ 4707009 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGACTGGCACACCCCGGAGCTGGTAAGACAAACATATCATTGCTTTCTTTATTATTGTTATTGATATTGTGTTATTTTCATCTCCACCAATTTATCTACTTAAGTACGGAATATAACAACTCATCCTTGTCATTCATGCTGACTGTTATGCTTTTGCAATATTCAATTATCTTCTTAATCGACACTAATAATTATAGTTTGCTTCCTACTCTGTTCCTAATTGTATTTCTGAACAAAGCTCATCACACCCATCCTGGTTCACTATGGCAACTGATCACCAGAACCCTGCAACCAAGCAAAAACAACCAGTTGCCAGTGCATTTAAGTTGGTGATCTACGAACAGGAAAACTTTCAAGGCCGCTGTCATGAGCTGACTGGGCCCTGTAACAACCTCCAGGAGGCGGACATGGAGAAAGTGGGCTCAATACTGGTGCTCTGTGGACCGTGGGTGGGATATGAGCAGCCCAGTTGTAAGGGGGAACAGTATGTGTTTGAGAAGGGTGAGTATCCTCGCTGGGACGCCTGGACCAACAGCAGACGCAGTGACTGCATCGCAGCCTTCCGCCCCATCAAAGTGGACAGCCAGGAACACAAGATCGTACTCTATGAGAACCCAAGCTTTGCTGGGAAGAAGATTGAGATCGTAGATGATGATGTTCCTAGCTTCCACGCTCATGGATACCATGAGAAAGTCTCTTCAGTTCGTGTGCAGAGTGGCACCTGGGTGGGCTATCAGTACCCAGGATACAGAGGCTACCAGTATTTGTTCGAGAAAGGAGAGTTTAAGGAGTGTTCTGAGTTTGGGGCCGTGCTGCCTCAGATCCAGTCCGTGAGGCGCATCCGTGACATGCAATATCACCCAAAAGGGGCCTTCCAACCCTCTAACTAAATACCCAGCACTCCCCTTCAAACCCCCAAAGCTTCTGAAACACCCCCTTCTTTCCCCAATCTTCACTTTTGAATGCTTATCTTTGACCCTTTCAATTTGTGTCAGTGATTCCATTTGCTACTGCTGAGAAATAAA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258715 lncRNA downstream 45425 4656086 ~ 4658110 (-) False G227980
TU258716 lncRNA downstream 45425 4656086 ~ 4658110 (-) False G227980
TU258717 lncRNA downstream 45425 4656086 ~ 4658110 (-) False G227980
TU258718 lncRNA downstream 45425 4656086 ~ 4658110 (-) True G227980
TU258726 lncRNA downstream 110644 4592579 ~ 4592891 (-) True G227986
TU258784 lncRNA upstream 5898 4712907 ~ 4713253 (-) True G228037
TU258757 lncRNA upstream 38732 4745741 ~ 4750012 (-) True G228012
TU258808 lncRNA upstream 69941 4776950 ~ 4777226 (-) True G228060
TU258809 lncRNA upstream 72562 4779571 ~ 4779782 (-) True G228061
TU258810 lncRNA upstream 73118 4780127 ~ 4780396 (-) True G228062
CI01000053_04642167_04642450.mRNA mRNA downstream 60370 4641841 ~ 4643165 (-) True CI01000053_04642167_04642450
CI01000053_04514278_04540909.mRNA mRNA downstream 162626 4513565 ~ 4540909 (-) True CI01000053_04514278_04540909
CI01000053_04494346_04508379.mRNA mRNA downstream 194895 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
CI01000053_04450920_04470110.mRNA mRNA downstream 233425 4450844 ~ 4470110 (-) True CI01000053_04450920_04470110
CI01000053_04423076_04430502.mRNA mRNA downstream 273033 4423076 ~ 4430502 (-) True CI01000053_04423076_04430502
CI01000053_04834397_04836861.mRNA mRNA upstream 127057 4834066 ~ 4837227 (-) True CI01000053_04834397_04836861
CI01000053_05102710_05104285.mRNA mRNA upstream 393588 5100597 ~ 5104490 (-) False CI01000053_05102710_05104285
CI01000053_05221746_05223262.mRNA mRNA upstream 513741 5220750 ~ 5223262 (-) True CI01000053_05221746_05223262
CI01000053_05302453_05304313.mRNA mRNA upstream 595190 5302199 ~ 5304313 (-) True CI01000053_05302453_05304313
CI01000053_05308075_05312795.mRNA mRNA upstream 599225 5306234 ~ 5312795 (-) True CI01000053_05308075_05312795
TU258305 other downstream 615795 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 1150564 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 1151557 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 1151557 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 1706267 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 1077474 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 1224583 5931592 ~ 5932241 (-) True G228750

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070382 False 942 mRNA 0.52 6 NC_007119.7 42629748 ~ 42636278 (+)