CI01000053_04450920_04470110 (SLC23A2)


Basic Information

Item Value
gene id CI01000053_04450920_04470110
gene name SLC23A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 4450844 ~ 4470110 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_04450920_04470110.mRNA
GTGGTTAACGGTGCCGTGCAAACCCCTGGTGATCAAGACGCAGAGGACACACAGCTCATGGCCATTTACGCGAAAGACAGCCAGACTGAGGACAAGTGCTCCATGTCAGAGACTGTGGACAGTGCAGACAGCATAGATACCAGGAGAATGGACATGATATACACCATAGAGGACACACCACCTTGGTATCTGTGTGTATTCCTGGGTTTACAGCACTACCTTACCTGCTTCAGTGGAACTATCGCTGTGCCCTTCCTGCTGGCTGAAGCCATGTGTGTGGGTTTTGACCAGTGGGCCACCAGTCAGCTCATTGGCACCATTTTCTTTTGCGTGGGCATCACCACCCTGCTGCAGACCACCCTTGGCTGCCGACTTCCATTGTTCCAAGCTAGTGCTTTTGCATTTCTCGCCCCAGCAAGAGCCATCCTTTCACTGGAAAAGTGGAAATGTAACGCAACAGCTGTTCCTGTATTAAATGGCACAGAGCTGCCACACACAGAAGACATCTGGCACCCCAGGATACGAGAGGTGGTCATAGGGGCCTTAGGTTTGCCAGGTGTCCTGTTGAAGTACATCGGGCCCCTCACCATCACCCCTACTGTCACTCTCATCGGACTTTCAGGCTTCAGGGCTGCTGGAGAGAGGGCAGGCAAACACTGGGGCATTGCCATGCTAACCATATTCCTGGTGCTGCTGTTCTCTCAGTATGCACGTAACATCCAGTTGCCACTCCCCATCTACAAATCTAAAAAAGGCTGGACGTCTTATCGTTTGCAGCTGTTCAAGATGTTCCCAATCATCATGGCTATCCTTGTGTCATGGTTTCTGTGTTTCGTCTTCACGGTGACTGACGTGTTTCCTCCTGAGAAGGACAAATATGGGTTCTACGCCCGTACAGATGCTCGACAGGGCATCCTGGCAGCTGCTCCCTGGTTTAAGATACCCTACCCATTCCAATGGGGGTTGCCCACAGTGTCAGCAGCAGGGGTGATTGGGATGCTGAGTGCTGTGGTTGCCAGTATCATAGAGTCCATTGGAGACTATTACGCCTGTGCCCGTCTCTCCTGTGCCCCTCCTCCACCTGTACATGCCATTAACAGAGGGATCTTTATGGAGGGCATTTCCTGTGTCCTCGATGGTGTTTTTGGGACAGGAAATGGCTCCACATCTTCTAGCCCAAACATCGGAGTGCTGGGCATCACAAAAGTGGGCAGCAGGCGGGTTATTCAGTATGGTGCAGCACTGATGCTACTACTAGGAATGGTGGGAAAATTCAGTGCTCTATTCGCATCATTGCCGGACCCAGTTCTGGGAGCGCTGTTCTGCACATTATTCGGCATGATCACTGCTGTTGGCCTTTCCAACCTGCAGTTTGTGGATCTCAACTCGTCCCGCAACCTGTTTGTCCTTGGCTTCTCCATCTTCTTCGGCCTGGTCCTGCCTAGCTACCTCAAAGAAAACCCCCTAGTCACTGGTATCGTGCAGATAGATCAGGTGCTGAACGTTCTGCTTACAACTGCCATGTTTGTAGGAGGTTCTGTGGCGTTTGTGCTGGATAATACTATTCCTGGAACCCCGGAGGAAAGGGGCATCCGTAAGATGAATCGTGGAAACAGCGCATCTAAACGGGAGAGAATGGAGTCTTACGACCTTCCGTTTGGTATGGATTTCCTGCGGCGCCATCGCATTTTCCAGTACCTCCCAATCAGCCCCACTTTCGCTGGCTACCAATGGAGCATCTTCACCCATGGCTGCCATGAACGCCATGCCAGGAGAGAGGACGAAATGCCAACAAAGCCAGAACTGGGAGAAAGTGGGGTATAGTGTTTAGCACTGGTAGGTTTTTAGATGGCTTCATTCCACCCAGTCAGTGAAATCTGCAGTCCAGTCCCTTAATAAA

Function

symbol description
slc23a2 Predicted to enable transmembrane transporter activity. Predicted to be involved in L-ascorbic acid metabolic process. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A2 (solute carrier family 23 member 2).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14611 SLC23A1, SVCT1; solute carrier family 23 (nucleobase transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_04450920_04470110.mRNA True 1900 mRNA 0.51 13 4450844 4470110

Neighbor

gene id symbol gene type direction distance location
CI01000053_04423076_04430502 RASSF2A coding downstream 20342 4423076 ~ 4430502 (-)
CI01000053_04415119_04415646 NA coding downstream 35198 4415061 ~ 4415646 (-)
CI01000053_04276080_04288879 FAM101A coding downstream 161965 4276040 ~ 4288879 (-)
CI01000053_03823296_03825234 NA coding downstream 625516 3823094 ~ 3825328 (-)
CI01000053_03696522_03699590 NA coding downstream 751145 3696458 ~ 3699699 (-)
CI01000053_04494346_04508379 KCNIP3A, KCNIP3 coding upstream 24212 4494322 ~ 4508640 (-)
CI01000053_04514278_04540909 NA coding upstream 43455 4513565 ~ 4540909 (-)
CI01000053_04642167_04642450 NA coding upstream 171731 4641841 ~ 4643165 (-)
CI01000053_04703670_04706744 CRYBB2 coding upstream 233425 4703535 ~ 4707009 (-)
CI01000053_04834397_04836861 NA coding upstream 363956 4834066 ~ 4837227 (-)
G227752 NA non-coding downstream 38237 4412389 ~ 4412607 (-)
G227751 NA non-coding downstream 39257 4411268 ~ 4411587 (-)
G227715 NA non-coding downstream 140344 4310249 ~ 4310500 (-)
G227710 NA non-coding downstream 153905 4296693 ~ 4296939 (-)
G227618 NA non-coding downstream 204146 4244758 ~ 4246698 (-)
G227664 NA non-coding upstream 102702 4572812 ~ 4573227 (-)
G227986 NA non-coding upstream 122469 4592579 ~ 4592891 (-)
G227980 NA non-coding upstream 185976 4656086 ~ 4658110 (-)
G228037 NA non-coding upstream 242797 4712907 ~ 4713253 (-)
G228012 NA non-coding upstream 275631 4745741 ~ 4750012 (-)
G227604 NA other downstream 363104 4087237 ~ 4087740 (-)
CI01000053_03551506_03551965 NA other downstream 897873 3550333 ~ 3552847 (-)
G226963 NA other downstream 1453576 2996717 ~ 2997268 (-)
G226826 NA other downstream 1883772 2565892 ~ 2567072 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other downstream 2213448 2225210 ~ 2226481 (-)
G228651 NA other upstream 1314373 5784483 ~ 5787690 (-)
G228750 NA other upstream 1461482 5931592 ~ 5932241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020761 slc23a2,LOC107394182,LOC108440813,LOC106585070 coding CM030127.1 CM030127.1 32385090 ~ 32396520 (-)