AMCG00020761 (slc23a2,LOC107394182,LOC108440813,LOC106585070)


Basic Information

Item Value
gene id AMCG00020761
gene name slc23a2,LOC107394182,LOC108440813,LOC106585070
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32385090 ~ 32396520 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020761
TTAGCgcacaacagagagagagagggagagagggagagagagagagagagagagagagggggggagtgAAGTCATTCCCGCACACAGACGCACATCCACACTGACTGACTCCTTCCCACTGCGATCCCGGCGCCTCGTCTGGAGCTGAAGAGCGCCCGGGGCTGCGGGGTACTTCACACGGCGGCAGTGTAGCGACATAACGGAGCCTTCCATCCCATCCGGGGCAGACGGAGTCCACAGCGCCAGCCCGGGGACAGACGGGGACACCGGGAGACGAGGACAGATGCTTGGAGGAAGCgggtgaggaagaggggagagggagatgtgACCGGACCACACAGCCACACCACCATACGCCCACGCGCTGCGccacggacggacggacggacagagagagacggagcGTGACGGAGAGACGGAGGTGctgggagagacggagagagggagcgagagaggcTTCTCGGGAGAGATGGGCGTGGGGAAGAACACCTCCAAGGCCATGGAGTCCAGCGAAGGGAAATACGACGAGGAGACGAAGAACAGCACCGACTTCTACCCCGTTCCTGCAGTGGTCAGTGGAGGCGCCCAGTCAGCGGGGGAGCAAGACAATGAGGACACCGAGCTCATGGCCATCTACAGCCGCGAGGGCGGGGGGGCTGAGAAGtccTCCCTGTCGGAGACACTGGACAGCCGGGATGGTGTGGACGCTCAGCGCATGGACATGATCTACACCATCGAGGACACGCCCCCCTGGTACCTCTGTCTCTTCCTGGGGCTGCAGCACTACCTGACGTGCTTCAGCGGGACAATCGCCGTGCCCTTCCTGCTGGCAGAGGCCATGTGCGTCGGGTTCGACCAGTGGGCCACCAGCCAGCTGATCGGCACCATCTTCTTCTGCGTGGGCATCACCACCCTGCTGCAGACCACCCTGGGGTGCcgacTCCCTCTGTTCCAGGCCAGTGCCTTTGCATTCCTGGCTCCAGCTCGTGCCATCCTGTCACTGGATAAGTGGAAGTGCAACGCCACAGaggtCCCAGTCCTGAACAGCACTGAGCTGCTCAACACTGAACACATCTGGCACCCCAGGATACGAGAGatCCAGGGTGCGATCATCGTATCCTCGCTGGTGGAGGTGTGCATCGGGCTGCTGGGCCTGCCGGGCGTTCTGCTGCAGTTCATCGGCCCGCTAACCATCACCCCCACCGTGGCCCTCATCGGACTGTCCGGCTTCCAGGCGGCCGGAGAGCGGGCAGGCAAGCACTGGGGCATCGCCATGCTgacGATCTTCCTGGTGCTGCTGTTCTCTCAGTACGCCCGCAACGTCCAGCTGCCGTTTCCCGTCTACAAACACAAGAAGGGCTGGACTGCCTACCGGCTGCAGCTCTTCAAGATGTTCCCTATCATCATGGCCATCCTGGTGTCCTGGCTGCTGTGCTTCATCTTCACGGTGACGGACGTGTTCCCGCCGCAGAAGGACAAGTACGGGTACTACGCGCGGACGGACGCTCGGCAGGGGGTGCTGGCCGCCGCTCCCTGGTTCAAGATCCCCTACCCCTtccAGTGGGGGTACCCCTCAGTGTCCGCTGCAGGGGTGATCGGGATGTTCAGTGCCGTGGTCGCCAGCATAATCGAGTCCATTGGCGATTATTACGCCTGCGCCCGTCTGTCCtgcgcccccccgccccccatccACGCCATCAACAGgGGGATCTTTGTGGAGGGGCTGTCCTGTGTGTTGGACGGGATGTTTGGGACAGGCAATGGCTCCACATCCTCCAGCCCCAACATCGGGGTGCTGGGCATCACCAAGgtggcCAGCAGGCGAGTGATCCAGTACGGTGCAGCTCTGATGCTGTTGCTGGGACTGGTGGGGAAGTTCAGTGCACTGTTTGCCTCCCTGCCCGACCCTGTGCTGGGGGCGCTGTTCTGCACTCTGTTTGGTATGATCACGGCGGTGGGCCTGTCCAACCTGCAGTTCATTGACCTGAACTCCTCCAGGAACCTGTTTGTCCTGGGCTTCTCCATCTTCTTCGGCCTGGTGCTGCCCAGCTACCTGAAACAGAACCCTCTGGTCACAGGGATAGTGGAGATAGACCAGGTGCTCAACGTGTTGCTGACGACGGCCATGTTTGTAGGGGGCTCTGTGGCATTCATCCTGGACAACACCATCCCAGGCACTCTGGAGGAGCGCGGGATCCGGCGGCTGAAGCGTGGCGTGGGGCCGAGCGGGGCTGAGCTGGAGGGGCTGCGCTCGTACGACCTGCCTTTCGGGATGGACTTCCTGCGCCGACACACCGCCTTCCAGCACCTGCCCATCAGCCCCACCTTCACCGGCTACCACTGGCGGCCCTGTGCCTCGCGGGGAGGGGGGCGCTGCCGGGGCCGGGGGGGCGAGGGGGCGACTGCGGGGGAGAGTGGGGTATAG

Function

symbol description
slc23a2 Predicted to enable transmembrane transporter activity. Predicted to be involved in L-ascorbic acid metabolic process. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A2 (solute carrier family 23 member 2).

NR:

description
PREDICTED: solute carrier family 23 member 2-like

GO: NA

KEGG:

id description
K23717 SLC23A2, SVCT2; solute carrier family 23 (nucleobase transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020761 True 2425 mRNA 0.63 16 32385090 32396520

Neighbor

gene id symbol gene type direction distance location
AMCG00020764 NA coding downstream 6166 32374088 ~ 32378924 (-)
AMCG00020758 NA coding downstream 15372 32368118 ~ 32369718 (-)
AMCG00020757 NA coding downstream 93636 32289896 ~ 32291454 (-)
AMCG00020753 NA coding downstream 115357 32267146 ~ 32269733 (-)
AMCG00020752 NA coding downstream 140612 32234154 ~ 32244478 (-)
AMCG00020763 kcnip3a,LOC108440810 coding upstream 1915 32398435 ~ 32406525 (-)
AMCG00020760 pcna,LOC106580445,LOC106585071 coding upstream 43174 32439694 ~ 32443671 (-)
AMCG00020762 LOC107393839,LOC104958878 coding upstream 47734 32444254 ~ 32449876 (-)
AMCG00020765 NA coding upstream 59060 32455580 ~ 32462337 (-)
AMCG00020769 adra2b,LOC108440671 coding upstream 96849 32493369 ~ 32495441 (-)
G65468 NA non-coding downstream 169333 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 197379 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 323793 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 581298 31785515 ~ 31803792 (-)
G65315 NA non-coding downstream 626590 31757451 ~ 31758500 (-)
G65571 NA non-coding upstream 118883 32515403 ~ 32515617 (-)
G65753 NA non-coding upstream 877656 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1409181 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1435215 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1564657 33961177 ~ 33962191 (-)
G65549 NA other downstream 19948 32358238 ~ 32365142 (-)
AMCG00020746 NA other downstream 262157 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 972267 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 1576244 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 1647114 30722783 ~ 30737976 (-)
AMCG00020767 NA other upstream 158340 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 211342 32607862 ~ 32610708 (-)
G65641 NA other upstream 258614 32655134 ~ 32657019 (-)
G65679 NA other upstream 489844 32886364 ~ 32891493 (-)
G65756 NA other upstream 972105 33368625 ~ 33369105 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_04450920_04470110 SLC23A2 coding CI01000053 null 4450844 ~ 4470110 (-)