RNA id: TCONS_00070382


Basic Information

Item Value
RNA id TCONS_00070382
length 942
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_035914
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42629748 ~ 42636278 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCAGTGCCAGCCGGTCAGCCTATTAGGACCTGACGATGAGTTTGTTCTGGACAAAGACATGTTTTGGCAGTGTTTCCACCCCTGAGCTTGCCATATATATTGAGCCGCAGAGGCCACCACACAGCGACTGGCACAACCCGGAGCTGCTCATCACACCCATCCTGGTTCACTATGGCAACTGATCACCAGAATCCTGCAACCAAGCAAAAACAACCAGTTGCCAGTGCCTTCaagTTGGTGATCTACGAACAGGAAAACTTTCAAGGCCGCTGTCATGAGCTGACTGGGCCCTGTAACAACCTCCAGGAGGCGGGCGTGGAGAAAGTGGGCTCAGTACTGGTGCAGTGTGGACCGTGGGTGGGATTTGAGCAGCCCGGCTGTAAGGGGGAACAGTATGTGTTTGAGAAGGGTGAGTATCCTCGCTGGGACTCCTGGACCAACAGCAGACGCAGTGACTGCATCGTCGCCTTCCGCCCCATCAAAGTGGACAGCCAGGAACACAAGATCGTCCTCTACGAGAACCCAAGCTTCACTGGGAAGAAGATTGAGATCATAGACGATGACGTTCCCAGCTTCCACGCTCATGGATACCATGAGAAAGTCTCTTCAGTTCGTGTGCAGAGTGGCACCTGGGTGGGCTATCAATACCCAGGATACAGAGGCTTCCAGTATTTGTTTGAGAAAGGAGAGTTTAAGGAGTGTTCTGAGTTCGGGGCCGCTCTGCCTCAGATCCAATCGGTGAGACGCATCCGGGACATGCAGTATCACCCTCGTGGAGCCTTCCAGGCCACCAGCTAAATGCCCATCAGTCCCTCTCAAACCCCCAAAGCTTCTGAATCCCCACTCTTCACCCTTTGAATGCTTCTCTTTGCCTCCTTCAAGTTGTCAGTGATTCCATTTGCTACTGCTGAGAAATAAATACTTGATTTTGCGTTAAGAA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract and cataract 3 multiple types. Orthologous to human CRYBB2 (crystallin beta B2).

Ensembl:

ensembl_id ENSDART00000075553

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072255 lncRNA upstream 570133 42052372 ~ 42059615 (+) False XLOC_035913
TCONS_00072256 lncRNA upstream 570133 42054590 ~ 42059615 (+) True XLOC_035913
TCONS_00071961 lncRNA upstream 824190 41794793 ~ 41805558 (+) True XLOC_035911
TCONS_00072254 lncRNA upstream 1055214 41570932 ~ 41574534 (+) False XLOC_035907
TCONS_00070375 lncRNA upstream 1055214 41571030 ~ 41574534 (+) True XLOC_035907
TCONS_00071962 lncRNA downstream 80727 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00071963 lncRNA downstream 127956 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070393 lncRNA downstream 197715 42833993 ~ 42907824 (+) False XLOC_035916
TCONS_00070394 lncRNA downstream 256057 42892335 ~ 42907824 (+) True XLOC_035916
TCONS_00072257 lncRNA downstream 331702 42967980 ~ 42981293 (+) True XLOC_035917
TCONS_00070380 mRNA upstream 916445 41712799 ~ 41713303 (+) True XLOC_035910
TCONS_00070378 mRNA upstream 978758 41647598 ~ 41650990 (+) True XLOC_035908
TCONS_00070376 mRNA upstream 978829 41647539 ~ 41650919 (+) False XLOC_035908
TCONS_00070377 mRNA upstream 979057 41647560 ~ 41650691 (+) False XLOC_035908
TCONS_00070374 mRNA upstream 1019543 41533268 ~ 41610205 (+) True XLOC_035906
TCONS_00070386 mRNA downstream 76469 42712747 ~ 42723686 (+) False XLOC_035915
TCONS_00070390 mRNA downstream 80727 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070389 mRNA downstream 80727 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070388 mRNA downstream 80727 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070391 mRNA downstream 81857 42718135 ~ 42723488 (+) True XLOC_035915
TCONS_00070381 other upstream 641635 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070379 other upstream 914982 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070370 other upstream 1294564 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070362 other upstream 1696910 40932722 ~ 40932838 (+) True XLOC_035897
TCONS_00070347 other upstream 2813583 39802782 ~ 39816165 (+) True XLOC_035884
TCONS_00070387 other downstream 80726 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070392 other downstream 127956 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070398 other downstream 375335 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070415 other downstream 2023535 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070426 other downstream 2323009 44959287 ~ 44968031 (+) True XLOC_035939

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_04703670_04706744.mRNA True 1027 mRNA 0.46 5 CI01000053 4703535 ~ 4707009 (-)