XLOC_035939 (CRAT)


Basic Information

Item Value
gene id XLOC_035939
gene name CRAT
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44926629 ~ 44976455 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070424
GATGACGTTGCGAACGTCCAAACAGGTCACACAGACCGATAGacggcaatgttttttttttgtttttttagtccGATTGACCACTAAATAAAAGACCACTCTAGATTATAGGCTAATAAAACTGTATATTAATTACTGAACAGTCTTGAAATCTTTAAACAGTCGTAAGACTTGTCAACACAGTGCAAGCTATTCGGGGTCAAAATTAACTGGTATCTCGGTAACGTTAGTTGTAGTTGTCAATCTTATTCAAGCGAGGGCGACAGTGTACGACTAGTCTGGCAACTTGTCAAGAAAGTTTTGGTCGCCCTTGAAAGCTCATAATGTCGGGGACACCCACTTCAGCTgtcaactgaaatctacaggattCGCGTGGAATTATGCTGTGTCTCTTAAGCAGAACAGCGGCAAGGACGGGCCTGGTGAAACATTGCCGTCTACTGAGTCCCATACCAGTTGTCCAAATTTCTGACCGGTCGCTGTTACATCAAGAAAGTCTGCCAAAGCTACCCGTTCCTCCACTGAAGCAAACATGTTCTCGATATCTGGCCTTGCTCGAACCACTAATCAGTGAGGAGGAGATGGCACACACATGCAAGCTCATGGACGAATTTCTACAACCTGGTGGTGTAGGAGAGAGACTTCAAAAGAGTTTGGAGAGACGGGCGCGCAAAACTGAAAACTGGGTGTGTATAATGCATGGATGTCTATTTGTAAGGGCAACTGGTGTCCTTGGTTTCCTGGTGTGAAATTTAGTAATAATAGTTTTTTAGTATTTTTGATACTGTGCACAAAATTCTATACTTTGGACCCACGTATAGTTTGctttagggctgcaactaacaattattttaataatagattAATCTGTCAATGATTTTGTAGATTAATTGATGAAtcggataaaaaaaagaaaagtattcATTTCcagcctttttttaaaaaacagaacTAAAATCTTTAGAAAGTGCACAAACATGTTGTCCTTGAACATctctgagctgttataataataataataataaaataaaaagttttcaatccaaatatcta
>TCONS_00070425
CTCATAATGTCGGGGACACCCACTTCAGCTgtcaactgaaatctacaggattCGCGTGGAATTATGCTGTGTCTCTTAAGCAGAACAGCGGCAAGGACGGGCCTGGTGAAACATTGCCGTCTACTGAGTCCCATACCAGTTGTCCAAATTTCTGACCGGTCGCTGTTACATCAAGAAAGTCTGCCAAAGCTACCCGTTCCTCCACTGAAGCAAACATGTTCTCGATATCTGGCCTTGCTCGAACCACTAATCAGTGAGGAGGAGATGGCACACACATGCAAGCTCATGGACGAATTTCTACAACCTGGTGGTGTAGGAGAGAGACTTCAAAAGAGTTTGGAGAGACGGGCGCGCAAAACTGAAAACTGGCTCTCTGACTGGTGGATGCAGTCTGCCTACCTGGATTCTCGAATGCCTGTGGTAGTGTACTCAAGTCCAGGGGTTGTTTTACCCAAAATGCACTTTCAAGATCGTCAAGGACAAATGAGGTTTGCTGCTAAACTAATTGCTGGGGTTTTGGATTTCAAAAAATTGATAGATAGTAAAACATTGCCTGTGGAATATCTGGGTGGCAAGCCTTTGTGCATGGACCAGTATTACCAGGTGCTCTCTTCATGTCGGATCCCTGGACCCAAGAGGGACAGTGTGGTAAACTATGCTACTGGAAAGACCCCGTCTACGCATATTACAGTGGTTCACAACTTTCAGTTCTTTGTTTTGGATGTGTACAACAGTGATGGTTCACCACTGACTGTTGATCAGATCTATGTTCAACTGGAAAAGATCTGGAACACTTCCCTTCAGACCAATAAAGAGCCTGTTGGCATCCTGACCTCAAACCACCGTAACACCTGGGGCAAGGCTTACAACAACCTTATCAAGGacaagACAAATAAGGAGTCGGTACGGGCAATCCAGAAGAGTATCTTCACAGTGTCTCTTGATGCTCCGATGCCACGTGTGTCAGATGAGATGTACCATAATAAGGTTGCAGCTCAAATGCTCCATGGTGGAGGCAGTCGCTGGAACAGTGGTAACCGTTGGTTTGACAAAACTCTGCAGTTCATAGTTGGGGAGGACGGATCATGTGGACTCACCTATGAACATGCGCCAGCCGAGGGACCTCCTATTGTTTTCTTGGTGGATCATGTTGTTGACTATATGAAGAGAACTGAGATGGTGagaactcccatgattccacttCCTATGCCATTAAAGCTTCGATTTAACATCACGCCAGAAATCAAGAAGGACATTGAGAAAGCCAAACAGAACATGAACATCATGGTCCATGACCTAGATGTTCGAGTGCTCAACTTTTCACAATATGGAAGAAAGTTCCCAAAGTCTCATAAACTGAGTCCTGATGCATTCATTCAAATGGCACTGCAGTTGGCATATTACAGgatgTATGAGACATGCTGTCCATCCTACGAGAGTGCATCTTTACGCATGTTTAAACTGGGCAGAACAGAAGCCATTCGATCCACCACCACAGAATCGTTGCAGTTCACAAAAGCCATGGATGATCCATCAAAAAATAATATTGAGAAAGCAGCACTGCTCAAAAATGCGATTAAAGTCCACAGAGAGCTCACATACATGGCCATCCATGGGCAGGCTATAGACAGGCACATGTTGGGCCTAAAGATGGTGGCCATTGAGGATCTGACATCTTTACCCGAGATTTTCATGGACACATCATTTGCTGTGGCTTCACATTTTAACCTCTACACAAGTCAGGTTGGATCAAAGACTGACTGCGTAATGTGTTTTGGACCCATGGTTCCTGATGGTTATGGTGTCTGTTACAATCCTATGGATGATCATATCAACTTTGCTGTGACTGCTTTCAATAGCTGTGAAGAAACCAATGCCACTAAATTGTCCACGTTTCTAACGGATGCACTTCTGGACATGAAGAATCTTCTAGACCAGGTGACTAAGGACCAGTGAGTGATGACACAGCTGTAATGGCAAAATAAACGTTCGCACAAGCGTTTCAGACTGAAGGCTTTTCAATGTATTTGAACTGACATCTACAGTATTGATGGTTTGATTTCTGTTTCATATCTGTTACTGTGGTGTGTTATTTTGTTACTTCTGTATGCGACTTAGAAAACTATTCTGAAATTGTTTACATTGGACACAAGCAGTGTGATAAGACTGCAGATAATGGAACCTATCAACAGAGATTCCGCTGGGACTGGTTGAAGGGCAACACAATTTAACAATAAGCATAAACTGATGCCTTATGCTGTTTATGATATTAAGACTAAGGAAAATTTGCAAGAGGTTCTTTGTCGTGTTCAGTGCTGATAGCTTGTAACTATCAATTGACCAGCATATTAGTTTGCTTACCTTGAAATTTGAACTGTTTGATCtggtgttttaatttttttgctctgtttaaatctaaatttagaatgtttattttgccaGCAAATATCGtttttctttaggtgaacaattaattaatGCAGGTTAATCCAATAAAAAAAGTCTTTGTTGGTA
>TCONS_00070426
acaagACAAATAAGGAGTCGGTACGGGCAATCCAGAAGAGTATCTTCACAGTGTCTCTTGATGCTCCGATGCCACGTGTGTCAGATGAGATGTACCATAATAAGGTTGCAGCTCAAATGCTCCATGGTGGAGGCAGTCGCTGGAACAGTGGTAACCGTTGGTTTGACAAAACTCTGCAGTTCATAGTTGGGGAGGACGGATCATGTGGACTCACCTATGAACATGCGCCAGCCGAGGGACCTCCTATTGTTTTCTTGGTGGATCATGTTGTTGACTATATcagcatccaagaaaggtatAGTCCTTTAgaagcaaagatgggccgaggatgACCAGTTTGCtaacaaatatGAAGAGAACTGAGATGGTGagaactcccatgattccacttCCTATGCCATTAAAGCTTCGATTTAACATCACGCCAGAAATCAAGAAGGACATTGAGAAAGCCAAACAGAACATGAACATCATGGTCCATGACCTAGATGTTCGAGTGCTCAACTTTTCACAATATGGAAGAAAGTTCCCAAAGTCTCATAAACTGAGTCCTGATGCATTCATTCAAATGGCACTGCAGTTGGCATATTACAGgatgTATGAGACATGCTGTCCATCCTACGAGAGTGCATCTTTACGCATGTTTAAACTGGGCAGAACAGAAGCCATTCGATCCACCACCACAGAATCGTTGCAGTTCACAAAAGCCATGGATGATCCATCAAAAAATAATATTGAGAAAGCAGCACTGCTCAAAAATGCGATTAAAGTCCACAGAGAGCTCACATACATG

Function

symbol description
crat Enables acyl-CoA oxidase activity and carnitine O-acetyltransferase activity. Involved in carnitine metabolic process, CoA-linked and fatty acid metabolic process. Located in mitochondrion and peroxisome. Implicated in neurodegeneration with brain iron accumulation.

GO:

id name namespace
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0051261 protein depolymerization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005581 collagen trimer cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0150034 distal axon cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000016545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070424 False 1053 lncRNA 0.39 2 44926629 44928382
TCONS_00070425 False 2514 mRNA 0.43 14 44926946 44976455
TCONS_00070426 True 793 nonsense_mediated_decay 0.44 7 44959287 44968031

Neighbor

gene id symbol gene type direction distance location
XLOC_035938 NA coding upstream 46228 44877975 ~ 44880401 (+)
XLOC_035937 si:ch1073-459j12.1 coding upstream 125788 44759576 ~ 44800841 (+)
XLOC_035936 NA coding upstream 179656 44744833 ~ 44746973 (+)
XLOC_035935 elmod3 coding upstream 188275 44714336 ~ 44738354 (+)
XLOC_035934 star coding upstream 218692 44703854 ~ 44707937 (+)
XLOC_035940 si:ch211-163b2.4 coding downstream 27204 45003659 ~ 45010555 (+)
XLOC_035941 NA coding downstream 178433 45154888 ~ 45156167 (+)
XLOC_035942 si:ch211-220m6.4 coding downstream 210534 45186989 ~ 45192728 (+)
XLOC_035943 NA coding downstream 247021 45223476 ~ 45224276 (+)
XLOC_035944 ubap2b coding downstream 317288 45293743 ~ 45328652 (+)
XLOC_035933 CR931937.1 non-coding upstream 266702 44659813 ~ 44659927 (+)
XLOC_035925 NA non-coding upstream 618593 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1555347 43366458 ~ 43371282 (+)
XLOC_035948 NA non-coding downstream 456817 45433272 ~ 45437216 (+)
XLOC_035949 NA non-coding downstream 463166 45439621 ~ 45440571 (+)
XLOC_035950 CU695141.2 non-coding downstream 468038 45444493 ~ 45445030 (+)

Expression


Co-expression Network