XLOC_035937 (si:ch1073-459j12.1)


Basic Information

Item Value
gene id XLOC_035937
gene name si:ch1073-459j12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44759576 ~ 44800841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070422
ACTCTCACTTTTCTTTTAATACTGTCTGTCTGTGGATCATGTCCTCTGGTTGAATAAAGCATCATGTTGGGACTAAGGAACCAGAAAACATTGGTGgttctctgtctgtctctgttgGTTCCCTCCTGGGAAGTGAACGGACTGACAGAACACAGCAAATCAGAGATCAGCCACACAGACCGAGAGCAACATGTGGAAGACAGGAACGTAACATCTGTAGAAGaTCTTCTGCAAGTGAAAATAATTCCACCCTATGCAACGATCGAAGTTGGACAACACAAACAATTGCTCTGCAAAGTTTCCAGTGATGCAAAGAATATCAACTGGGTTTCTCCTAATGGTGAGAAAGTTCTGACAAAACACGGCAATCTCAAGGTCCACAATCATGGCAGTGTCTTGTCTTCTCTTACTGTTCTGAATGCCAATTTAAACAATGCTGGAATATACAAATGTGTGGCCACAAATGGAGACACAGAATCACAAGCTACTGTCAAGCTGGACATCATTTTGAAGAGGATGCGTAGAGACACTGACAGGAAAGGAAGAGAAAAACGACTGAAAGAGCCCAAGCCTAGCAAGAAACCCAAAGCTTCCAAGCCCACCAAGAAACCCAAGAGTGAGAAAAAGGGCAAAGGTGAGAAGGGCGGGAAGAAGAAAGGCAAGAAGAACAGGGAAGAATCCACCACTGTAGCCACAACCACTGTGGCCCCCACAACCACAGTACCCATGGAGTATGAGGAGTTTTACGACCCTGAACCCGACCAGTACTGGGATGAAGATTTTCCTGCAGAGACGACAACAGTGGCAAGAACTACAACCACCCcgacagaaaaaacaaaagattTCATTCCAGACATGGATGAGTATTCCCAACCTGACTCATATGATGACTATTGGAAGGTGGATGAGCCCACGCCAACGACTTCTGTGATCGCCGGTCGTCCAGCTGACGATGATGATTACTGGGATGCGAGATCAGTGGAGATGGTGGAAAACCTGCCTTTCCCTGATGGCAAAGAGATCAGCTCTACTGACAATGACTGGCAATACACAACGACAGAGGAACCCACTGTGCCTCCATTTGAAAACAGCTGGTATGAAGAATATGAATACGGACATGAAAAGAAACTAGAAGAGGAGAGAGAAAGACTGAGAAAAGAACAAGAGGAAAAAGAAAGGGAAGAGAGGAAGCGTCTGGAAGAAGAGGAGAGAGAACGCAGGATTTACAGACCTCCACCACGTGTCTACAGAGAGCCTAAAAtATGTCCTCCCTTGGGTATGGAGTCTCATCGCATTGACAATGACCAGTTACTAACATCCTCTGTTTTTCAACATCGGTATGGGTCACACAGAGCTCGTCTTAATATTCAGGCATCTGGGGATGACGATGATATGAATGGTGGAGCATGGTGTGCTAACCCTGAAGAGAAGGTCCACTGGATTGAAGTGGATGCACGTACACTAACAGAGTTCACAGGGGTGATCACTCAAGGACGAGATGACCCCTTAGAGAGTGACTATGTGTCTACCTACTATGTGGCATTTAGTAATGATAGCAGAGAGTGGACTTTCCTTCATGATGGGTATGCTGAATGGTTATTCTTTGGTAACTCAGATAAAAACACCCCAGTATTGTCTCAGTTTATGGAGCCGGTAGTGGCACGTTACATCCGTATCTTGCCACAGAGCTGGAATGGTACCATGTGTATGAGGATGGAGATTTTAGGCTGCCCAGTACAAGATCCTCTTAGTCAACACCAGAGTGAGAATGAAGTGACACGTCGAGATAACCTGGACTACACCCATCACAACTACCTAGACATGGAGAAGCTAATGAAATCCATTTCTGATGAGTGTCCCAACATCACCAGATTCTACAGTTTGGGCAAGAGCTTTAAAGGTCTGGAAATTTATGCCATGGAGATTACTGATAACCCTGGGGTCCACGAAACAGGAGAGCCAGAATTCAGGTACACAGCTGGCTATCATGGTAATGAGGCTTTGGGACGAGAGCTGCTTCTAATGTTCATGCAGTATTTGTGTAAAGAATATAAAGATGGCAACCCTCGAGTTCGCCACCTAGTGGATGAAACACGAATCCATCTGGTTCCATCAGTCAATCCTGATGGCCATGTGAAAGCTTTTGAGAAGGGTTCAGAGTTGGGCAGCTGGACATTAGGACACTGGACTGAAGATGGCCATGATATCTTCCAGAACTTTCCAgacttaaataacatttattgggATTCAGAGGATAAAGGCATGGTGCCCAAATTGACACCAAATCACCATATTCCCATTCCTGAGGGTATTCTCTCAAGCAATGGCTCAATTGCAATGGAGACTCTGGCCCTCATCTCATGGATGGAAAGCCATCCATTTGTGCTTGGTGCCAACCTGCAGGGTGGTGAGAAACTAGTGACATACCCGTTTGACATGCGCCGTCTAACCAAAGAGTCTGAGGCTATGGAGAAAAAACTTGGCTCCAGAGCAAACCGACGTAAGCGACAGTatgaggaagaggaagaagaacCCAACCCTTACCTTCACATAGGATACCATCAGGAGAGCTACAGCGGACCCCAGGAAAACCACGCATATGATCATGAGAGCTATGGGTATCATCAAGAAAGTTATGGGTATCACCATCAGAGTCAAGGGTACCATGAGGAAACACAAGGGTATCACGATGAGACCCAAGGCTATCATAATGAAAACCAAGGGTATCATAATGAAAACCAAGGATATCACAATGAGAACCAAAGGTACCACCATGAGGGTTACTCTGAAGGGTACAATGAGGGATATCAAGAGGGATACCCAGAGGGATATAGGGGGGGTTATGGAGAGGGTGAACAAGAGGAAGAAATCAGAATGGTTGAGGACCAATCTTTGTTCCGCTGGCTGGCCATATCATATGCATCTACTCACCGCACCATGACTCAATCATATCAAAGAGGATGCCATAGTGATGATCCAACAGGTGGGATGGGAATTGTCAACCGTGCAAAGTGGAAGCCCATCCCAGGAAGCATGGATGACTTCAGTTACCTTCACACTAACTGTTTTGAGCTGTCAGTTTTCCTTGGCTGTGATAAATTTCCTCACCAGAGTGAACTTTTAAGAGAGTGGGAGCACAACAGAGAAGCCCTACTGACATTTATGGCTCAGGTTCATCGGGGTATTAAGGGAGTTGTGAGGGATAATGAAGGCAACCCTATTACCAATGCCACTGTGTCTGTGGAGGGAGTCAACCATGATGTTAAGACTGGTGAAGCTGGAGATTACTGGCGACTTCTAAACCCTGGTGAGTACCGGGTAACAGCCCGTGCAGAAGGCTACTCTCCATTCACCCGTCTGTGTGTGGTAGGGTTTGACCCTGGTGCCACTCTCTGCAACTTTGACCTGAACAAGTCAAACTGGGACCGCATCAAACAGATCATGGCTCTTCATGGCAATAAACCAATCCGGTTGCTGAGCAGTGGCAGCAGGAACGGTGTGCGACATTATTCACACAGCAGTAACCAAATTCCTGTCAGTAATAGTGGAGATATGAGCAGGGCTCGTCTCCGTCGATTACGACTAATGAGAATTCGTCGTTTACGTCAACAAAGGCTTCTGGCCCAAAAAATCATACCAACTACAACAACTGTGACTACCACTTCACTTCCAACTACCGCAGAGACTACAACCGTCTGGTATGACTCCTTGCCAGAAATCTTTGAAGAGAATACAACCCCACATGAAGAAATTGAGTTGACAGATACACTGGACTACAACTACAACTACAATATAAATGATTACTAAGAGCAAACTCCAAATGAATGTTTTGCTCTGAAGATTGTATTTGACCATTTCTTTCTCTCACCTAAACAGTGTAAGGCAAGTGTATGGGGAGATTTTTTATCAGGTTCAGTGATTTGTGCAAAAGtttcttttcatttaataaattcttATATTCATATT
>TCONS_00070423
TCTTTGCACATATCCATTGTATCAATAGtaaacacattgttttttttacaatgtattgtCTCCTCAGAAAGGGAAGAGAGGAAGCGTCTGGAAGAAGAGGAGAGAGAACGCAGGATTTACAGACCTCCACCACGTGTCTACAGAGAGCCTAAAAtATGTCCTCCCTTGGGTATGGAGTCTCATCGCATTGACAATGACCAGTTACTAACATCCTCTGTTTTTCAACATCGGTATGGGTCACACAGAGCTCGTCTTAATATTCAGGCATCTGGGGATGACGATGATATGAATGGTGGAGCATGGTGTGCTAACCCTGAAGAGAAGGTCCACTGGATTGAAGTGGATGCACGTACACTAACAGAGTTCACAGGGGTGATCACTCAAGGACGAGATGACCCCTTAGAGAGTGACTATGTGTCTACCTACTATGTGGCATTTAGTAATGATAGCAGAGAGTGGACTTTCCTTCATGATGGGTATGCTGAATGGTTATTCTTTGGTAACTCAGATAAAAACACCCCAGTATTGTCTCAGTTTATGGAGCCGGTAGTGGCACGTTACATCCGTATCTTGCCACAGAGCTGGAATGGTACCATGTGTATGAGGATGGAGATTTTAGGCTGCCCAGTACAAGATCCTCTTAGTCAACACCAGAGTGAGAATGAAGTGACACGTCGAGATAACCTGGACTACACCCATCACAACTACCTAGACATGGAGAAGCTAATGAAATCCATTTCTGATGAGTGTCCCAACATCACCAGATTCTACAGTTTGGGCAAGAGCTTTAAAGGTCTGGAAATTTATGCCATGGAGATTACTGATAACCCTGGGGTCCACGAAACAGGAGAGCCAGAATTCAGGTACACAGCTGGCTATCATGGTAATGAGGCTTTGGGACGAGAGCTGCTTCTAATGTTCATGCAGTATTTGTGTAAAGAATATAAAGATGGCAACCCTCGAGTTCGCCACCTAGTGGATGAAACACGAATCCATCTGGTTCCATCAGTCAATCCTGATGGCCATGTGAAAGCTTTTGAGAAGGGTTCAGAGTTGGGCAGCTGGACATTAGGACACTGGACTGAAGATGGCCATGATATCTTCCAGAACTTTCCAgacttaaataacatttattgggATTCAGAGGATAAAGGCATGGTGCCCAAATTGACACCAAATCACCATATTCCCATTCCTGAGGGTATTCTCTCAAGCAATGGCTCAATTGCAATGGAGACTCTGGCCCTCATCTCATGGATGGAAAGCCATCCATTTGTGCTTGGTGCCAACCTGCAGGGTGGTGAGAAACTAGTGACATACCCGTTTGACATGCGCCGTCTAACCAAAGAGTCTGAGGCTATGGAGAAAAAACTTGGCTCCAGAGCAAACCGACGTAAGCGACAGTatgaggaagaggaagaagaacCCAACCCTTACCTTCACATAGGATACCATCAGGAGAGCTACAGCGGACCCCAGGAAAACCACGCATATGATCATGAGAGCTATGGGTATCATCAAGAAAGTTATGGGTATCACCATCAGAGTCAAGGGTACCATGAGGAAACACAAGGGTATCACGATGAGACCCAAGGCTATCATAATGAAAACCAAGGGTATCATAATGAAAACCAAGGATATCACAATGAGAACCAAAGGTACCACCATGAGGGTTACTCTGAAGGGTACAATGAGGGATATCAAGAGGGATACCCAGAGGGATATAGGGGGGGTTATGGAGAGGGTGAACAAGAGGAAGAAATCAGAATGGTTGAGGACCAATCTTTGTTCCGCTGGCTGGCCATATCATATGCATCTACTCACCGCACCATGACTCAATCATATCAAAGAGGATGCCATAGTGATGATCCAACAGGTGGGATGGGAATTGTCAACCGTGCAAAGTGGAAGCCCATCCCAGGAAGCATGGATGACTTCAGTTACCTTCACACTAACTGTTTTGAGCTGTCAGTTTTCCTTGGCTGTGATAAATTTCCTCACCAGAGTGAACTTTTAAGAGAGTGGGAGCACAACAGAGAAGCCCTACTGACATTTATGGCTCAGGTTCATCGGGGTATTAAGGGAGTTGTGAGGGATAATGAAGGCAACCCTATTACCAATGCCACTGTGTCTGTGGAGGGAGTCAACCATGATGTTAAGACTGGTGAAGCTGGAGATTACTGGCGACTTCTAAACCCTGGTGAGTACCGGGTAACAGCCCGTGCAGAAGGCTACTCTCCATTCACCCGTCTGTGTGTGGTAGGGTTTGACCCTGGTGCCACTCTCTGCAACTTTGACCTGAACAAGTCAAACTGGGACCGCATCAAACAGATCATGGCTCTTCATGGCAATAAACCAATCCGGTTGCTGAGCAGTGGCAGCAGGAACGGTGTGCGACATTATTCACACAGCAGTAACCAAATTCCTGTCAGTAATAGTGGAGATATGAGCAGGGCTCGTCTCCGTCGATTACGACTAATGAGAATTCGTCGTTTACGTCAACAAAGGCTTCTGGCCCAAAAAATCATACCAACTACAACAACTGTGACTACCACTTCACTTCCAACTACCGCAGAGACTACAACCGTCTGGTATGACTCCTTGCCAGAAATCTTTGAAGAGAATACAACCCCACATGAAGAAATTGAGTTGACAGATACACTGGACTACAACTACAACTACAATATAAATGATTACTAAGAGCAAACTCCAAATGAATGTTTTGCTCTGAAGATTGTATTTGACCATTTCTTTCTCTCACCTAAACAGTGTAAGGCAAGTGTATGGGGAGATTTTTTATCAGGTTCAGTGATTTGTGCAAAAGtttcttttcatttaataaattcttATATTCATATTCTCACTGTTGTTGTTTTGCATTACAGCACTATTTCGCTAGCTGGAGGTCACAATTTCCATTTGGGGTCACCAAAGTTTTATGAAAAGTCTGCAAACTTAGATTGGAATGAAACTGGCAAATAACTAATCAAATTCTACATTACCTGGC

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8546 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome classic-like 2. Orthologous to human AEBP1 (AE binding protein 1).

Ensembl:

ensembl_id ENSDARG00000006901

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070422 False 3966 mRNA 0.45 22 44759576 44800693
TCONS_00070423 True 3007 mRNA 0.44 13 44783424 44800841

Neighbor

gene id symbol gene type direction distance location
XLOC_035936 NA coding upstream 12603 44744833 ~ 44746973 (+)
XLOC_035935 elmod3 coding upstream 21222 44714336 ~ 44738354 (+)
XLOC_035934 star coding upstream 51639 44703854 ~ 44707937 (+)
XLOC_035932 grk5l coding upstream 64316 44623540 ~ 44695260 (+)
XLOC_035933 CR931937.1 coding upstream 99649 44659813 ~ 44659927 (+)
XLOC_035938 NA coding downstream 77134 44877975 ~ 44880401 (+)
XLOC_035939 CRAT coding downstream 125788 44926629 ~ 44976455 (+)
XLOC_035940 si:ch211-163b2.4 coding downstream 202818 45003659 ~ 45010555 (+)
XLOC_035941 NA coding downstream 354047 45154888 ~ 45156167 (+)
XLOC_035942 si:ch211-220m6.4 coding downstream 386148 45186989 ~ 45192728 (+)
XLOC_035925 NA non-coding upstream 451540 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1388294 43366458 ~ 43371282 (+)
XLOC_035921 NA non-coding upstream 1605139 43149742 ~ 43154437 (+)
XLOC_035943 NA non-coding downstream 422635 45223476 ~ 45224276 (+)
XLOC_035948 NA non-coding downstream 632431 45433272 ~ 45437216 (+)
XLOC_035949 NA non-coding downstream 638780 45439621 ~ 45440571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_00706927_00733583 NA coding CI01000146 null 706927 ~ 734138 (+)