XLOC_035921


Basic Information

Item Value
gene id XLOC_035921
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 43149742 ~ 43154437 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071964
TGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTATGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTGACCTGTGCTCGCCTCACGCCTAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatGCAGTCTTGAGGAGTTAATCCCCACATttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgacaaacagtaatcattaatactgtgacctcactgcttccttggattctgtgttctttaacttgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacagaaacaccaactgacccagctgaggcttaaaccactgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataatggactagatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttgatcatccttactgatgattgctttatagctcatatattgatgtttgcacataattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttcCTTATACTATTGTTTTTCTCTACTCTGCAATAGCATTGCAATTGCCTTACTGATGATTCCTGATTTATAAATgatgcaaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaacaaccctttcaagaaaaaaaattggattgcatttctcaactgctaatgtcgctattgaacacaatcagtacattttaacacatgttataatttctaaaatatcaacctctaccaaatgattgatatgtatgtttatggtaaaagtaccagaattataaaaaatctgaaaaattatgtgcaagaccaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttaaaagaaatattttgaacactaaatcatcttttttcttatgactttaacagtcattatttaaaacagtaaaaacgaggtcaaccatttggtagagcaggcagtcaaagggttaatgctgaggtgcagatgggaaaaatctcaaattcatttggacacattttatcttttgtcataaataaaattccattactgaacaactatg
>TCONS_00072258
GAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTATGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTGACCTGTGCTCGCCTCACGCCTAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGACCACTTTATTAACACAACACCTAGGATAATTTAGgagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactcttgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttaatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGCTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatGCAGTCTTGAGGAGTTAATCCCCACATttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacatgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggataggttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataataaatttttagttgactaatggttattcaattattagggggcagccctagtaatcattagccacttcaacactttaaactgagagattgaactctaatgccaatttgtttttgtctggttattttttaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg
>TCONS_00071965
GCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGACCACTTTATTAACACAACACCTAGGATAATTTAGgagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatGCAGTCTTGAGGAGTTAATCCCCACATttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgaca

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007498 mesoderm development biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035282 segmentation biological_process
GO:0045165 cell fate commitment biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071964 False 2595 lncRNA 0.37 6 43149742 43154437
TCONS_00072258 False 2188 lncRNA 0.39 1 43149745 43151932
TCONS_00071965 True 737 lncRNA 0.42 5 43150197 43152907

Neighbor

gene id symbol gene type direction distance location
XLOC_035920 si:dkey-65l23.2 coding upstream 66049 43078044 ~ 43083693 (+)
XLOC_035919 prnpa coding upstream 92767 43053519 ~ 43056975 (+)
XLOC_035918 rassf2a coding upstream 100673 42998944 ~ 43049069 (+)
XLOC_035917 slc23a2 coding upstream 163053 42917515 ~ 42986689 (+)
XLOC_035916 NA coding upstream 241918 42764234 ~ 42907824 (+)
XLOC_035922 rflna coding downstream 186558 43340995 ~ 43363590 (+)
XLOC_035923 NA coding downstream 212021 43366458 ~ 43371282 (+)
XLOC_035924 AL808129.2 coding downstream 698306 43852743 ~ 43853846 (+)
XLOC_035925 NA coding downstream 1121409 44275846 ~ 44308036 (+)
XLOC_035926 CU914776.2 coding downstream 1204006 44358443 ~ 44382240 (+)
XLOC_035913 NA non-coding upstream 1090127 42052372 ~ 42059615 (+)
XLOC_035912 BX469918.1 non-coding upstream 1161629 41987350 ~ 41988113 (+)
XLOC_035911 NA non-coding upstream 1344184 41794793 ~ 41805558 (+)
XLOC_035909 CU326364.1 non-coding upstream 1434976 41710359 ~ 41714766 (+)
XLOC_035933 CR931937.1 non-coding downstream 1505376 44659813 ~ 44659927 (+)
XLOC_035936 NA non-coding downstream 1590396 44744833 ~ 44746973 (+)
XLOC_035938 NA non-coding downstream 1723538 44877975 ~ 44880401 (+)

Expression


Co-expression Network