XLOC_035917 (slc23a2)


Basic Information

Item Value
gene id XLOC_035917
gene name slc23a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42917515 ~ 42986689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070395
CGCTTTGACGTCAGAGTTTGTTTTGAGCATGCGTTGAAATAGCACAGTGCCCCGTGTACGTCCGTGTATTGCTATAtaaccaggaaaaaaaaatgttccacTCTCCTCTAGTTCATTATATGTAGACACAAGAACCTCCAACGCTGGAAGCTGTTTGATCTGAGAAAGctgctgtgagtgtgtgtatatttcCCCTCAGTAGTGTTGAAGTAGGGCACGCAGTACTGCAGCTGCCAGGTACCACGACGGAGACAACACAAGGGGAAATTACAGAAGAGGAcaacgttttttgtttttttctacccgGAAAGATGAGCTGGCTGGTCAATCAGTGGAGCATGAGATTGTGCTGACGGGCCGTTCGGCAGTGTTTCTACCTGAGCGCGAGTGGAGGAGAGCAGCAGATCCACAGTCAGTGGAGGACGAGCTCAGCGGAGGAATGGGTGTTGGGAAAAACACCACTTCCAAATCCATGGACTCCACCACAGAGCCTGGCAAATACGAGGAGGAGAACAAACACAGTGCACACTTCTATCCCATCCCTGTGGTTAACGGTGTCGTGCAGACCGCTGGAGATCAAGATGCTGAAGACACGCAGCTCATGGCTATTTATGCAAAAGACAGCCAGACGGAGGACAAGTGCTCCATATCAGACACTGTGGACAGTGCAGACAGCATCGACGCCGGGAGGATAGACATGATATACACAATAGAGGACACACCACCTTGGTATTTGTGTGTGTTCCTGGGTTTACAGCACTATCTCACCTGCTTCAGTGGAACTATTGCTGTGCCCTTTTTACTGGCTGAAGCGATGTGTGTGGGATTTGACCAATGGGCAACCAGTCAGCTGATCGGCACCATTTTCTTTTGTGTAGGCATCACCACTCTGCTACAGACCACCTTTGGCTGCCGGCTTCCGTTGTTCCAGGCCAGTGCGTTTGCTTTTCTCGCTCCAGCCAGAGCCATTCTTTCACTGGAGAAATGGAAGTGTAATGCAACAGCTACTCTGTTTTTAAATAGCACAGAGCTGCCGCACACAGAGGACATCTGGTACCCCAGGATACGAGAGATTCAAGGTGCAATAATAGTGTCGTCTCTAATCGAGGTGGTCATCGGGGCCTTGGGTTTGCCTGGCGTCCTGCTCAAATACATTGGGCCACTTACAATCACCCCTACCGTGACCCTGATCGGGTTGTCAGGCTTCCAGGCAGCTGGCGAGCGAGCAGGCAAACACTGGGGCATTGCCATGCTGACGATATTCCTGGTGTTGCTGTTTTCTCAGTACGCGCGGAACATCCACCTGCCGCTCCCCGTCTACAAATCCAAAAAAGGCTGGACGTCGTACCGCCTGCAGCTCTTCAAGATGTTCCCAATCATCATGGCTATCCTGGTGTCGTGGTTTCTTTGCTTCATCTTTACGGTGACTGATGTGTTTCCTCCTGAGAAGGACAAATACGGTTTCTATGCCAGAACAGACGCTCGACAGGGCATCCTGGCAGCCGCTCCGTGGTTTAAGATACCCTACCCCTTCCAATGGGGTCTGCCCACAGTGACCGCAGCAGGGGTGATTGGGATGCTGAGTGCCGTTGTTGCCAGTATTATTGAGTCCATCGGGGACTATTATGCCTGTGCCCGTCTCTCCGGTGCCCCTCCACCTCCTATACATGCTATTAACAgAGGGATCTTTACAGAGGGCCTTTCCTGTGTTCTTGATGGAGTCTTTGGCACTGGAAATGGCTCTACATCTTCCAGCCCAAACATCGGAGTGCTGGGCATCACAAAAGTGGGCAGCAGGAGGGTCATCCAGTATGGTGCAGCATTCATGCTACTGCTAGGAATGGTGGGTAAATTTAGCGCTCTGTTTGCATCGCTGCCGGACCCAGTCCTTGGAGCTTTATTCTGCACACTATTCGGCATGATCACCGCCGTCGGCCTCTCCAACCTGCAGTTTGTGGATCTCAACTCGTCCCGCAACCTGTTTGTCCTGGGATTCTCCATCTTCTTCGGCCTGGTTCTGCCTAGTTACCTTAAAGAAAACCCACTAGTCACTGGTATAGTGCAGATCGATCAAGTGCTGAATGTTCTTCTGACGACTGCCATGTTTGTTGGCGGTTCAGTGGCGTTTGTGTTGGATAATACTATTCCAGGCACTGCAGAGGAGAGGGGCATCCGTAAGATGAATCGTGGAAACAGCTCATCTAAACGGGAACGAATGGAATCCTACGACCTTCCGATTGGTATGGACTTCTTGCGGCGCCATCGCATTTTCCAGTACCTTCCAATCAGCCCAACTTTCGCCGGCTACCAGTGGAGCATCTTCACCCACAGCTGTCGAAACAGGAAAGACGAAAGCATGCCAGCCAAACCAGAACTGGGAGAAAGTGGAGTATAGTGTTAAACACCGCCCTATCCGGTAGGTTTTTAGACAGTCATCGCGAGGCTTCATTCCACCCAGTCAGTGAATTCTGCAGTCCTATCCTTAAATACACAACCAGCTTCAGACTCTTTCATCCTTTAAAAACTCTCCCTTTTGATCGACTTGTCATCAAACACTAAAGGCGGTTTCTTGAGCGGTTTTCAGGCGGATCTGAAATTGTCCCAATGACAACGGCGAGTGGAAGCAAGGCAGTTATACACGTTCGTCTCTTTATGTGGGAGGATGTGGCAACACAGACTGATTGATGGAAAACACTTTataaaatcctccgcatttctaGTATCAGTGTTCCTTTCTTTGGCCGACCTGCACTGCTCCGTCTGGTATGTCGATAATCAGATGCGTTTGACGATAAATGACATGCTAATGAGTTCCATTGTCACACATGCCCGTTCACAACAAGCCCACACTCGCTTTATGCATGGCACAGTTATGGAACAAAGTGGATCGCAAGGTTTACTTAGTGATGCAAGGTTATTGTGCTTTATGTTTGAATTGCACTGCTTGAATTAACGCACAAAATGTAGTTTGCTTGTTCGTGATTTTAACTTCCAGaagtttttatgattttaaagggttagttcaacaTGAAGTGAAAATTCTGTCGTTTACTCAGCTTTGTTTcgtttcagaacacaaattatgatattttttatgaaatatgaGATATTTTGCCTCTCGATTGTAACTGATCCAAGTTTCGATATTCAAAATCTTCAGaaatacaaactaaaattaatacATGATGGTCAGTTTAATCACAATTTTACGAATTGTTAGTAGTCTTTGTGTGAGggaaataaaaacagatattttGCCTCTAGATTGTATCTGATCGAAATTATAAAAATTCTAAATCTTAAGAAAGAcaacttaaaaataatacatattggccagttttattacaattttatcagTCAATAAAAGTATTTGtgtgtggggaaaaaaagaacGAAGAAAAATTAATTAGCGTTTTGAAAATAACCGAAATCTTGGGCGTTTCGAATGACATGAgagtaaataacagaattttctttCTGGGTGAACCAAGTCCCAATGCCTTAAAAAGATTGAGTCACTCAAGTTTATGTCGTTAGTTAGCTGCTATTTTGATAAATAGTTCTTGAAAAATGAGGGCGTTTCTTATCACCAGTAATAAATACTGTTTGTGCCACCTTGAATTGCTAGTTTCAGAGGCGGACGCAAGTCAAGGAAAGCTATGCAGTAGGTAAAATGACacgcacagaaaaaaaaaacacgaatgTATAATCAGTGCATGGTTTGCAAAAGAAGGAAGACTGGAAGGGAAAAACTTGAGAATGGTTGCACTCAGGTCTTGTTGAAAGACGGTGGGAAAAACGTTTTTTATAACTATATTGAGCTCGGTTCTGAgcgccacattttttttttttttggtctgtccTTTGTTTGATGTAGGTGACGCTTCCTCACCGCTGTTGATGTGAATGTGGTTTATATTGTAGATCCCACAAGCACTGCTGATGTGGTTTGTTTGTGAGGAAGAGCAGAGTTTAGTGGGCATTTATATAGAGGGCGGCAATCTGAACATCAAACCTGGAAGACTTATGCACTGCTGGTTACCTAAAGATGTCCTGTGGGTTTTAATAATGGGGATTTTTAAGTTCATGAGTGAAATAAATTCTGTTAAACATT
>TCONS_00070396
ATGGGTGTTGGGAAAAACACCACTTCCAAATCCATGGACTCCACCACAGAGCCTGGCAAATACGAGGAGGAGAACAAACACAGTGCACACTTCTATCCCATCCCTGTGGTTAACGGTGTCGTGCAGACCGCTGGAGATCAAGATGCTGAAGACACGCAGCTCATGGCTATTTATGCAAAAGACAGCCAGACGGAGGACAAGTGCTCCATATCAGACACTGTGGACAGTGCAGACAGCATCGACGCCGGGAGGATAGACATGATATACACAATAGAGGACACACCACCTTGGTATTTGTGTGTGTTCCTGGGTTTACAGCACTATCTCACCTGCTTCAGTGGAACTATTGCTGTGCCCTTTTTACTGGCTGAAGCGATGTGTGTGGGATTTGACCAATGGGCAACCAGTCAGCTGATCGGCACCATTTTCTTTTGTGTAGGCATCACCACTCTGCTACAGACCACCTTTGGCTGCCGGCTTCCGTTGTTCCAGGCCAGTGCGTTTGCTTTTCTCGCTCCAGCCAGAGCCATTCTTTCACTGGAGAAATGGAAGTGTAATGCAACAGCTACTCTGTTTTTAAATAGCACAGAGCTGCCGCACACAGAGGACATCTGGTACCCCAGGATACGAGAGATTCAAGGTGCAATAATAGTGTCGTCTCTAATCGAGGTGGTCATCGGGGCCTTGGGTTTGCCTGGCGTCCTGCTCAAATACATTGGGCCACTTACAATCACCCCTACCGTGACCCTGATCGGGTTGTCAGGCTTCCAGGCAGCTGGCGAGCGAGCAGGCAAACACTGGGGCATTGCCATGCTGACGATATTCCTGGTGTTGCTGTTTTCTCAGTACGCGCGGAACATCCACCTGCCGCTCCCCGTCTACAAATCCAAAAAAGGCTGGACGTCGTACCGCCTGCAGCTCTTCAAGATGTTCCCAATCATCATGGCTATCCTGGTGTCGTGGTTTCTTTGCTTCATCTTTACGGTGACTGATGTGTTTCCTCCTGAGAAGGACAAATACGGTTTCTATGCCAGAACAGACGCTCGACAGGGCATCCTGGCAGCCGCTCCGTGGTTTAAGATACCCTACCCCTTCCAATGGGGTCTGCCCACAGTGACCGCAGCAGGGGTGATTGGGATGCTGAGTGCCGTTGTTGCCAGTATTATTGAGTCCATCGGGGACTATTATGCCTGTGCCCGTCTCTCCGGTGCCCCTCCACCTCCTATACATGCTATTAACAgAGGGATCTTTACAGAGGGCCTTTCCTGTGTTCTTGATGGAGTCTTTGGCACTGGAAATGGCTCTACATCTTCCAGCCCAAACATCGGAGTGCTGGGCATCACAAAAGTGGGCAGCAGGAGGGTCATCCAGTATGGTGCAGCATTCATGCTACTGCTAGGAATGGTGGGTAAATTTAGCGCTCTGTTTGCATCGCTGCCGGACCCAGTCCTTGGAGCTTTATTCTGCACACTATTCGGCATGATCACCGCCGTCGGCCTCTCCAACCTGCAGTTTGTGGATCTCAACTCGTCCCGCAACCTGTTTGTCCTGGGATTCTCCATCTTCTTCGGCCTGGTTCTGCCTAGTTACCTTAAAGAAAACCCACTAGTCACTGGTATAGTGCAGATCGATCAAGTGCTGAATGTTCTTCTGACGACTGCCATGTTTGTTGGCGGTTCAGTGGCGTTTGTGTTGGATAATACTATTCCAGGCACTGCAGAGGAGAGGGGCATCCGTAAGATGAATCGTGGAAACAGCTCATCTAAACGGGAACGAATGGAATCCTACGACCTTCCGATTGGTATGGACTTCTTGCGGCGCCATCGCATTTTCCAGTACCTTCCAATCAGCCCAACTTTCGCCGGCTACCAGTGGAGCATCTTCACCCACAGCTGTCGAAACAGGAAAGACGAAAGCATGCCAGCCAAACCAGAACTGGGAGAAAGTGGAGTATAG
>TCONS_00072257
AGATTCAAGGTGCAATAATAGTGTCGTCTCTAATCGAGGTGGTCATCGGGGCCTTGGGTTTGCCTGGCGTCCTGCTCAAATACATTGGGCCACTTACAATCACCCCTACCGTGACCCTGATCGGGTTGTCAGGCTTCCAGGCAGCTGGCGAGCGAGCAGGCAAACACTGGGGCATTGCCATGCTGTGAGTCCTACTGTCCTGCAAACATGACTAGCTTTGTGTGAACGCCGTGTTTGATGTATAACTCTCCATCTCTCTAAAACAGGACGGACTGAGCATAAGAAGAGTTTCTTGTTTTAATACcgtctctctctgtttctctgtaGATCATCATGGCTATCCTGGTGTCGTGGTTTCTTTGCTTCATCTTTACGGTGACTGATGTGTTTCCTCCTGAGAAGGACAAATACGGTTTCTATGCCAGAACAGACGCTCGACAGGGCATCCTGGCAGCCGCTCCGTGGTTTAAGATACCCTACCCCTTCCAATGGGGTCTGCCCACAGTGACCGCAGCAGGGGTGATTGGGATGCTGAGTGCCGTTGTTGCCAGTATTATTGAGTCCATCGGGGACTATTATGCCTGTGCCCGTCTCTCCGGTGCCCCTCCACCTCCTATACATGCTATTAACAgAGGGATCTTTACAGAGGGCCTTTCCTGTGTTCTTGATGGAGTCTTTGGCACTGGAAATGGCTCTACATCTTCCAGCCCAAACATCGGAGTGCTGGGCATCACAAAAGTGGGCAGCAGGAGGGTCATCCAGTATGGTGCAGCATTCATGCTACTGCTAGGAATGGTGGGTAAATTTAGCGCTCTGTTTGCATCGCTGCCGGACCCAGTCCTTGGAGCTTTATTCTGCACACTATTCGGCATGATCACCGCCGTCGGCCTCTCCAACCTGCAGTTTGTGGATCTCAACTCGTCCCGCAACCTGTTTGTCCTGGGATTCTCCATCTTCTTCGGCCTGGTTCTGCCTAGTTACCTTAAAGAAAACCCACTAGTCACTGGTATAGTGCAGATCGATCAAGTGCTGAATGTTCTTCTGACGACTGCCATGTTTGTTGGCGGTTCAGTGGCGTTTGTGTTGGATAATACTATTCCAGGTAGG

Function

symbol description
slc23a2 Predicted to enable transmembrane transporter activity. Predicted to be involved in L-ascorbic acid metabolic process. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A2 (solute carrier family 23 member 2).

GO:

id name namespace
GO:0019852 L-ascorbic acid metabolic process biological_process
GO:0015882 L-ascorbic acid transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-090521-3 Predicted to enable transmembrane transporter activity. Predicted to be involved in L-ascorbic acid metabolic process. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A2 (solute carrier family 23 member 2).

Ensembl:

ensembl_id ENSDARG00000017365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070395 False 4114 mRNA 0.45 15 42917515 42986689
TCONS_00070396 False 1956 mRNA 0.52 14 42941555 42984970
TCONS_00072257 True 1107 lncRNA 0.51 6 42967980 42981293

Neighbor

gene id symbol gene type direction distance location
XLOC_035916 NA coding upstream 9691 42764234 ~ 42907824 (+)
XLOC_035915 zgc:194007 coding upstream 192705 42712747 ~ 42724810 (+)
XLOC_035914 crybb2 coding upstream 281237 42629748 ~ 42636278 (+)
XLOC_035913 NA coding upstream 857900 42052372 ~ 42059615 (+)
XLOC_035912 BX469918.1 coding upstream 929402 41987350 ~ 41988113 (+)
XLOC_035918 rassf2a coding downstream 12255 42998944 ~ 43049069 (+)
XLOC_035919 prnpa coding downstream 66830 43053519 ~ 43056975 (+)
XLOC_035920 si:dkey-65l23.2 coding downstream 91355 43078044 ~ 43083693 (+)
XLOC_035921 NA coding downstream 163053 43149742 ~ 43154437 (+)
XLOC_035922 rflna coding downstream 354306 43340995 ~ 43363590 (+)
XLOC_035911 NA non-coding upstream 1111957 41794793 ~ 41805558 (+)
XLOC_035909 CU326364.1 non-coding upstream 1202749 41710359 ~ 41714766 (+)
XLOC_035923 NA non-coding downstream 379769 43366458 ~ 43371282 (+)
XLOC_035925 NA non-coding downstream 1289157 44275846 ~ 44308036 (+)
XLOC_035933 CR931937.1 non-coding downstream 1673124 44659813 ~ 44659927 (+)
XLOC_035936 NA non-coding downstream 1758144 44744833 ~ 44746973 (+)

Expression


Co-expression Network