XLOC_035914 (crybb2)


Basic Information

Item Value
gene id XLOC_035914
gene name crybb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42629748 ~ 42636278 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070382
TCCCAGTGCCAGCCGGTCAGCCTATTAGGACCTGACGATGAGTTTGTTCTGGACAAAGACATGTTTTGGCAGTGTTTCCACCCCTGAGCTTGCCATATATATTGAGCCGCAGAGGCCACCACACAGCGACTGGCACAACCCGGAGCTGCTCATCACACCCATCCTGGTTCACTATGGCAACTGATCACCAGAATCCTGCAACCAAGCAAAAACAACCAGTTGCCAGTGCCTTCaagTTGGTGATCTACGAACAGGAAAACTTTCAAGGCCGCTGTCATGAGCTGACTGGGCCCTGTAACAACCTCCAGGAGGCGGGCGTGGAGAAAGTGGGCTCAGTACTGGTGCAGTGTGGACCGTGGGTGGGATTTGAGCAGCCCGGCTGTAAGGGGGAACAGTATGTGTTTGAGAAGGGTGAGTATCCTCGCTGGGACTCCTGGACCAACAGCAGACGCAGTGACTGCATCGTCGCCTTCCGCCCCATCAAAGTGGACAGCCAGGAACACAAGATCGTCCTCTACGAGAACCCAAGCTTCACTGGGAAGAAGATTGAGATCATAGACGATGACGTTCCCAGCTTCCACGCTCATGGATACCATGAGAAAGTCTCTTCAGTTCGTGTGCAGAGTGGCACCTGGGTGGGCTATCAATACCCAGGATACAGAGGCTTCCAGTATTTGTTTGAGAAAGGAGAGTTTAAGGAGTGTTCTGAGTTCGGGGCCGCTCTGCCTCAGATCCAATCGGTGAGACGCATCCGGGACATGCAGTATCACCCTCGTGGAGCCTTCCAGGCCACCAGCTAAATGCCCATCAGTCCCTCTCAAACCCCCAAAGCTTCTGAATCCCCACTCTTCACCCTTTGAATGCTTCTCTTTGCCTCCTTCAAGTTGTCAGTGATTCCATTTGCTACTGCTGAGAAATAAATACTTGATTTTGCGTTAAGAA
>TCONS_00070383
ACAACCCGGAGCTGGTAAGACACACACACTATTTATGCCTTATTATTTGATCAGTGTGCTATTTGCATCACTATTTGATTTATCGATGTATTAAATACAACGAAGTGCATTAGTGATATTCAATTATACACACAACTGACGCTAATACATATTGCTTGCTTCCTATTCCTAACGTTATCTCGGAACGAAGCTCATCACACCCATCCTGGTTCACTATGGCAACTGATCACCAGAATCCTGCAACCAAGCAAAAACAACCAGTTGCCAGTGCCTTCaagTTGGTGATCTACGAACAGGAAAACTTTCAAGGCCGCTGTCATGAGCTGACTGGGCCCTGTAACAACCTCCAGGAGGCGGGCGTGGAGAAAGTGGGCTCAGTACTGGTGCAGTGTGGACCGTGGGTGGGATTTGAGCAGCCCGGCTGTAAGGGGGAACAGTATGTGTTTGAGAAGGGTGAGTATCCTCGCTGGGACTCCTGGACCAACAGCAGACGCAGTGACTGCATCGTCGCCTTCCGCCCCATCAAAGTGGTAACTAAATACAGTACAGCAGAATTGTGAAAGTGTCACGTGTGTAAAGTACTGATTTAAACACAATTAACTtgaattaaaaacttaaaattaaaacttaaaattcaattaaataatttattttaaaactaaacattttacaCAAATCAAAACTTGTGTATTTTGTATTTAGCAACTTTATGGGatgcttttttttctcaaataataaaaattctacaTAATTTCTATTTCTATATATATGGAAATAATTAACTATactaatcta
>TCONS_00070384
ACAACCCGGAGCTGGTAAGACACACACACTATTTATGCCTTATTATTTGATCAGTGTGCTATTTGCATCACTATTTGATTTATCGATGTATTAAATACAACGAAGTGCATTAGTGATATTCAATTATACACACAACTGACGCTAATACATATTGCTTGCTTCCTATTCCTAACGTTATCTCGGAACGAAGCTCATCACACCCATCCTGGTTCACTATGGCAACTGATCACCAGAATCCTGCAACCAAGCAAAAACAACCAGTTGCCAGTGCCTTCaagTTGGTGATCTACGAACAGGAAAACTTTCAAGGCCGCTGTCATGAGCTGACTGGGCCCTGTAACAACCTCCAGGAGGCGGGCGTGGAGAAAGTGGGCTCAGTACTGGTGCAGTGTGGACCGTGGGTGGGATTTGAGCAGCCCGGCTGTAAGGGGGAACAGTATGTGTTTGAGAAGGGTGAGTATCCTCGCTGGGACTCCTGGACCAACAGCAGACGCAGTGACTGCATCGTCGCCTTCCGCCCCATCAAAGTGGACAGCCAGGAACACAAGATCGTCCTCTACGAGAACCCAAGCTTCACTGGGAAGAAGATTGAGATCATAGACGATGACGTTCCCAGCTTCCACGCTCATGGATACCATGAGAAAGTCTCTTCAGTTCGTGTGCAGAGTGGCACCTGGGTGGGCTATCAATACCCAGGATACAGAGGCTTCCAGTATTTGTTTGAGAAAGGAGAGTTTAAGGAGTGTTCTGAGTTCGGGGCCGCTCTGCCTC
>TCONS_00070385
GTATTGGTTGGCCGGGCAGCGTGCAGGAATTTCACTTATTAATATTCTAAGCCATACTTTACATGCTAtgtcagagcgaatattcagcaTGGTGGGTGGGATTTGAGCAGCCCGGCTGTAAGGGGGAACAGTATGTGTTTGAGAAGGGTGAGTATCCTCGCTGGGACTCCTGGACCAACAGCAGACGCAGTGACTGCATCGTCGCCTTCCGCCCCATCAAAGTGGACAGCCAGGAACACAAGATCGTCCTCTACGAGAACCCAAGCTTCACTGGGAAGAAGATTGAGATCATAGACGATGACGTTCCCAGCTTCCACGCTCATGGATACCATGAGAAAGTCTCTTCAGTTCGTGTGCAGAGTGGCACCTGGGTGGGCTATCAATACCCAGGATACAGAGGCTTCCAGTATTTG

Function

symbol description
crybb2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract and cataract 3 multiple types. Orthologous to human CRYBB2 (crystallin beta B2).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract and cataract 3 multiple types. Orthologous to human CRYBB2 (crystallin beta B2).

Ensembl:

ensembl_id ENSDARG00000053512

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070382 False 942 mRNA 0.52 6 42629748 42636278
TCONS_00070383 False 795 lncRNA 0.39 3 42629882 42632701
TCONS_00070384 False 771 mRNA 0.49 5 42629882 42636065
TCONS_00070385 True 413 processed_transcript 0.51 4 42631632 42636013

Neighbor

gene id symbol gene type direction distance location
XLOC_035913 NA coding upstream 570133 42052372 ~ 42059615 (+)
XLOC_035912 BX469918.1 coding upstream 641635 41987350 ~ 41988113 (+)
XLOC_035911 NA coding upstream 824190 41794793 ~ 41805558 (+)
XLOC_035909 CU326364.1 coding upstream 914982 41710359 ~ 41714766 (+)
XLOC_035910 si:ch211-208g1.1 coding upstream 916445 41712799 ~ 41713303 (+)
XLOC_035915 zgc:194007 coding downstream 76469 42712747 ~ 42724810 (+)
XLOC_035916 NA coding downstream 127956 42764234 ~ 42907824 (+)
XLOC_035917 slc23a2 coding downstream 281237 42917515 ~ 42986689 (+)
XLOC_035918 rassf2a coding downstream 362666 42998944 ~ 43049069 (+)
XLOC_035919 prnpa coding downstream 417241 43053519 ~ 43056975 (+)
XLOC_035907 NA non-coding upstream 1055214 41570932 ~ 41574534 (+)
XLOC_035921 NA non-coding downstream 513464 43149742 ~ 43154437 (+)
XLOC_035923 NA non-coding downstream 730180 43366458 ~ 43371282 (+)
XLOC_035925 NA non-coding downstream 1639568 44275846 ~ 44308036 (+)
XLOC_035933 CR931937.1 non-coding downstream 2023535 44659813 ~ 44659927 (+)

Expression


Co-expression Network