XLOC_035907


Basic Information

Item Value
gene id XLOC_035907
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 41570932 ~ 41574534 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072254
GTTCAATGAAGTTGAGCAGACTTTACATTTTGAGTTCTTCACTGGATCATCTACTTCCCGTCTTTGCACATGCTCAGTCTGTCTTCGGGTGCCATTTTGCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGTAAGCTTTGTTTTAGCTTTATTATCAAAATTAATCTAAATAGCGTGCAAAtctaaagtaaaatgtaatgttgTGTTCCCAAAAAACTAAGTTACATCGTGTGAAGATCATTTCTGACAAGCTCGGGCTAACAAGCTAGCCACCTGTGAAGTTTGCTTCATTTGAAGGACTGTTTAACGTTAATTTGCTTCTTAAACTGGAGGGAAATGTAGTGAAATATTGTTGTTGCAAACAGACATATCTGAGCGGCCGGTCACCACTGTATTGTTAACCCTGTTGTGTCTGTATTAAAACAGCAATGCGATAacattaaaaccacttcaaaataATATTTAGCATACCACTTTAAATATACAGTCACTAGTAGTGTACATATAGTATTCCAGGAGCTTgtggtttttatgattatttatttggcATACATTAACCATTTATGAGTTAAgtaacatgtatgtatgtattatttaaatcttctctttttatgtttgcaatatttattttatattgtgctttttaaaaacatcagtttaatttatgaaaacaatttgacctgcaatgttacatttttatttacttttttataggtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTGTAGGTGCATTAAAATCACATTTGACATTAGCACATTAACAGTCTGCTGCAGTTACTgactatttgatttttttaacctCCTGTAGCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGCAAGTTTGCATTTgagattatttatttcaaaatgtataaccATTGTTCACAATTCAtactattcatttttttatggtCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGGGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagccgttttaacttttattctatagcccgtactagtatctattttcttGTTACTAGTACTTATCCATTTTCTTAGTTCTTTTCCATTAAGTACtaactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagatactagtacttatttattagatactagtacttattaaatatatactagtacttatttattagatactagttcttatttattagttactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttattaaatagatactagtacttatttattagatactagtacttattaaatagatactagtacttatttaatagttactagtacttatttattagttactagtacttatttattagataccagtacttatttattagatactagtacttatttattagatactaatacttattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTATTTCTATGGGATCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTAaataatagatactagtacttatgtattagatactagtccttattcattaggtactagtatctatttaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatGTAGAGTCGATGCTTAACGGATAatcaattcactatttgctaatgcttaataaatgattcattattataaaagtgttacctgaaatgttttataaatagaaGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTtgctttgcctttgcttttttttaCCTTGCTTTTTGGAGATGTTTGTGATTTAGCAGTAAAAATAGTTTTTCATCctctttttatgtttcttttttactgCAGGACACAGAGCCAGAAGATATTTGCACAATAGAGATGGAGATTGACATCCTTAGCACTGTTGAAAATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATAGTGCTGGAAAAGATTTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATTGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCatggagtgcaaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcgtacCACTTGTGTCAGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACAGTGTCAA
>TCONS_00070375
GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGGGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACAAAACAGTTTGTTCCCTAAAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGATCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagccgttttaacttttattctatagcccgtactagtatctattttcttGTTACTAGTACTTATCCATTTTCTTAGTTCTTTTCCATTAAGTACtaactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttatttattagatactagtacttatttattagatactagtacttatttattagatactagtacttattaaatatatactagtacttatttattagatactagttcttatttattagttactagtacttatttattagttactagtacttatttattagatactagtacttatttattagttactagtacttattaaatagatactagtacttatttattagatactagtacttattaaatagatactagtacttatttaatagttactagtacttatttattagttactagtacttatttattagataccagtacttatttattagatactagtacttatttattagatactaatacttattaaatagatactagttcttatttattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTATTTCTATGGGATCTCTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTAaataatagatactagtacttatgtattagatactagtccttattcattaggtactagtatctatttaatagatactagtacttatttattagatactagtacttattaaatagcttactaatgtttattcatGTAGAGTCGATGCTTAACGGATAatcaattcactatttgctaatgcttaataaatgattcattattataaaagtgttacctgaaatgttttataaatagaaGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTtgctttgcctttgcttttttttaCCTTGCTTTTTGGAGATGTTTGTGATTTAGCAGTAAAAATAGTTTTTCATCctctttttatgtttcttttttactgCAGGACACAGAGCCAGAAGATATTTGCACAATAGAGATGGAGATTGACATCCTTAGCACTGTTGAAAATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATAGTGCTGGAAAAGATTTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGAATGCATTTGTTTGTACACTGAAATTGTGTTACTCTTGGTGTTGTCACCAAActtaaattcagttttgattttacattttcaaattttaaaaacatccatttcccaccAATTGATAGATTGGCTGTTGTGTTCAAGCgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCatggagtgcaaacacagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcgtacCACTTGTGTCAGCTTATACACAGACCAGTTGATCAATGTGAAATTCttaagtgtccctgtatctgtggttacactcagtaaacagcagtgagtttggtgaactgatgatcttcacGCCCAATCAgtcttttctgttgagcatgtgaacacaatggcaatatAACAGTGTTTAAAACAGTGTCAA

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0042743 hydrogen peroxide metabolic process biological_process
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0015669 gas transport biological_process
GO:0015671 oxygen transport biological_process
GO:0006259 DNA metabolic process biological_process
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072254 False 3603 lncRNA 0.33 1 41570932 41574534
TCONS_00070375 True 2747 lncRNA 0.33 4 41571030 41574534

Neighbor

gene id symbol gene type direction distance location
XLOC_035905 BX005462.2 coding upstream 51651 41505590 ~ 41519281 (+)
XLOC_035904 NA coding upstream 108200 41453618 ~ 41462732 (+)
XLOC_035903 si:ch211-152p23.2 coding upstream 130243 41413919 ~ 41440689 (+)
XLOC_035901 olfml2a coding upstream 228014 41281801 ~ 41342918 (+)
XLOC_035908 si:ch211-158d24.4 coding downstream 73005 41647539 ~ 41650990 (+)
XLOC_035909 CU326364.1 coding downstream 135825 41710359 ~ 41714766 (+)
XLOC_035910 si:ch211-208g1.1 coding downstream 138265 41712799 ~ 41713303 (+)
XLOC_035911 NA coding downstream 220259 41794793 ~ 41805558 (+)
XLOC_035912 BX469918.1 coding downstream 412816 41987350 ~ 41988113 (+)
XLOC_035902 CR382384.1 non-coding upstream 235748 41335070 ~ 41335184 (+)
XLOC_035898 NA non-coding upstream 604144 40966528 ~ 40966788 (+)
XLOC_035897 AL935142.1 non-coding upstream 638094 40932722 ~ 40932838 (+)
XLOC_035913 NA non-coding downstream 477838 42052372 ~ 42059615 (+)
XLOC_035916 NA non-coding downstream 1189700 42764234 ~ 42907824 (+)

Expression


Co-expression Network