XLOC_035908 (si:ch211-158d24.4)


Basic Information

Item Value
gene id XLOC_035908
gene name si:ch211-158d24.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 41647539 ~ 41650990 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070376
GCAGCACTGGATTGACTTGACTGAGGGCTCGATCATATTTTCACTGCGCCGAAACTGAACGAGTGGGCTGTTTGTTTTTGGGCGTTGAACACGTGGGAGAATCGTGTATATAAAGAGTGGATGTAATGAAGTGGCGATTATTAAACCACCAGTTATGGAGAAGGCAAACGAACAAGCAGACATGCTTTTTATAGAGTCTGAGCCGGAGAACCGCCTGCGGTTACAGTACCGCTCACTGCGGCGACAAGTGTTGTTCATCCAGACCTTCAGCGTGCTATTCTGCGTCACTTGCTGCACCTTCACGCTTATGTATCACGCAAACGCGTCCAGCTGCAAGGACAATATCGCTGAAGAGCCACCTAGAACTGAGATGCAGCGTATTGAATCTAATCGAAGAGACACAACTTTCATTCATCTCAAAGTCAAACACAACATACTTGCCGTTAAGACTAGAGATGTGCCATGGACCAAGTATTCAACACAAGATCTTCCAGATTATAGTGGATACTTCGCTTTGTCTGAAGATGGTACATCTCTGGAAGTCAAACGTTCGGGAACATACAAAGTTTCTCTACAGATTACGTACAGAGGACTTGATAACTACATCAAAGAAACCACTCTGCAGCAGGATATTAAAACCTATTCTCACGGCTATGAAGCACCCATTTTTCTGCTTACTTCAATGGAAACATTGAACTTTACATCCCCATACTGGAAAAAGAGTATTTTCTCTGAAGGTATTTTTTCTCTTGAAGCTGGGGATAAACTCAGCGTAGAGTCCAACAATCTACCCCTCATTGACCGTTTTCACCAAACAACTTTCTTTGTGGTTTATCCACATTTTTCATCATGGTGAAAATTGAAGTAATGATGTACTATATTCATATGTCTGAGATTAGTTTGTGATTCAGTCATTTGGATCTCGGATATGTTGTATggaagaaaaaatatacag
>TCONS_00070377
TGAGGGCTCGATCATATTTTCACTGCGCCGAAACTGAACGAGTGGGCTGTTTGTTTTTGGGCGTTGAACACGTGGGAGAATCGTGTATATAAAGAGTGGATGTAATGAAGTGGCGATTATTAAACCACCAGTTATGGAGAAGGCAAACGAACAAGCAGACATGCTTTTTATAGAGTCTGAGCCGGAGAACCGCCTGCGGTTACAGTACCGCTCACTGCGGCGACAAGTGTTGTTCATCCAGACCTTCAGCGTGCTATTCTGCGTCACTTGCTGCACCTTCACGCTTATGTATCACGCAAACGCGTCCAGCTGCAAGGACAATATCGCTGAAGAGCCACCTAGAACTGAGATGCAGCGTATTGAATCTAATCGAAGAGACACAACTTTCATTCATCTCAAAGggataattgAGTGTTTCATAAGTCAAACACAACATACTTGCCGTTAAGACTAGAGATGTGCCATGGACCAAGTATTCAACACAAGATCTTCCAGATTATAGTGGATACTTCGCTTTGTCTGAAGATGGTACATCTCTGGAAGTCAAACGTTCGGGAACATACAAAGTTTCTCTACAGATTACGTACAGAGGACTTGATAACTACATCAAAGAAACCACTCTGCAGCAGGATATTAAAACCTATTCTCACGGCTATGAAGCACCCATTTTTCTGCTTACTTCAATGGAAACATTGAACTTTACATCCCCATACTGGAAAAAGAGTATT
>TCONS_00070378
CGAGTGGGCTGTTTGTTTTTGGGCGTTGAACACGTGGGAGAATCGTGTATATAAAGAGTGGATGTAATGAAGTGGCGATTATTAAACCACCAGTTATGGAGAAGGCAAACGAACAAGCAGACATGCTTTTTATAGAGTCTGAGCCGGAGAACCGCCTGCGGTTACAGTACCGCTCACTGCGGCGACAAGTGTTGTTCATCCAGACCTTCAGCGTGCTATTCTGCGTCACTTGCTGCACCTTCACGCTTATGTATCACGCAAACGCGTCCAGCTGCAAGTCAAACACAACATACTTGCCGTTAAGACTAGAGATGTGCCATGGACCAAGTATTCAACACAAGATCTTCCAGATTATAGTGGATACTTCGCTTTGTCTGAAGATGGTACATCTCTGGAAGTCAAACGTTCGGGAACATACAAAGTTTCTCTACAGATTACGTACAGAGGACTTGATAACTACATCAAAGAAACCACTCTGCAGCAGGATATTAAAACCTATTCTCACGGCTATGAAGCACCCATTTTTCTGCTTACTTCAATGGAAACATTGAACTTTACATCCCCATACTGGAAAAAGAGTATTTTCTCTGAAGGTATTTTTTCTCTTGAAGCTGGGGATAAACTCAGCGTAGAGTCCAACAATCTACCCCTCATTGACCGTTTTCACCAAACAACTTTCTTTGTGGTTTATCCACATTTTTCATCATGGTGAAAATTGAAGTAATGATGTACTATATTCATATGTCTGAGATTAGTTTGTGATTCAGTCATTTGGATCTCGGATATGTTGTATggaagaaaaaatatacaggtCATGGTGTCATGGTAAAACTGGGGTAATTTGAAATATACCGGCACTGTTGTGTTTTGACAAGctacttt

Function

symbol description
si:ch211-158d24.4 Predicted to enable tumor necrosis factor receptor binding activity. Predicted to act upstream of or within apoptotic process; immune response; and signal transduction. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human TNFSF15 (TNF superfamily member 15).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006955 immune response biological_process
GO:0007165 signal transduction biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-141 Predicted to enable tumor necrosis factor receptor binding activity. Predicted to act upstream of or within apoptotic process; immune response; and signal transduction. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human TNFSF15 (TNF superfamily member 15).

Ensembl:

ensembl_id ENSDARG00000093048

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070376 False 955 mRNA 0.42 4 41647539 41650919
TCONS_00070377 False 728 mRNA 0.43 5 41647560 41650691
TCONS_00070378 True 882 mRNA 0.41 2 41647598 41650990

Neighbor

gene id symbol gene type direction distance location
XLOC_035906 si:ch211-158d24.2 coding upstream 37334 41533268 ~ 41610205 (+)
XLOC_035907 NA coding upstream 73005 41570932 ~ 41574534 (+)
XLOC_035905 BX005462.2 coding upstream 128258 41505590 ~ 41519281 (+)
XLOC_035904 NA coding upstream 184807 41453618 ~ 41462732 (+)
XLOC_035903 si:ch211-152p23.2 coding upstream 206850 41413919 ~ 41440689 (+)
XLOC_035909 CU326364.1 coding downstream 59369 41710359 ~ 41714766 (+)
XLOC_035910 si:ch211-208g1.1 coding downstream 61809 41712799 ~ 41713303 (+)
XLOC_035911 NA coding downstream 143803 41794793 ~ 41805558 (+)
XLOC_035912 BX469918.1 coding downstream 336360 41987350 ~ 41988113 (+)
XLOC_035913 NA coding downstream 401382 42052372 ~ 42059615 (+)
XLOC_035902 CR382384.1 non-coding upstream 312355 41335070 ~ 41335184 (+)
XLOC_035898 NA non-coding upstream 680751 40966528 ~ 40966788 (+)
XLOC_035916 NA non-coding downstream 1113244 42764234 ~ 42907824 (+)

Expression


Co-expression Network