XLOC_035916


Basic Information

Item Value
gene id XLOC_035916
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42764234 ~ 42907824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071963
CGGAGAAGCTGCTGCTCCTGGAGAGAGTGGAAGAAACGCGTTTCTCCTCAGCGCTTGAGGAGGATTCATCACGAGACACAATGCAGGAGGATGGCAAGGTGGTGGACGGCACTCTGCTGGGTGATGCCAATGGGGTGGAGCCTGGCAGAGGCCGACAGAAGGAAAGTGGCAAATGGCAGAGACCTCGCTTCACACGGAAAGCCCTCATGAGGTGCTGTCTGGTCAAATGGATCATCGCCAGCACTGGACCCAAGGAGCAAGtagACAGCAGTGACAGTGACCTTGAGCTGTCCACGGTGCGGCATCAGCCCGAGGGTCTGGAGCAGTTGCAGGCACAGACCAAATTCACCAAGAAGGAGCTGCAGTCCCTATATAGGGGCTTTAAAAATGAGTGCCCAAGTGGTTTGGTTGATGAGGAAACTTTCAAGACCATCTACTCCCAATTCTTTCCCCAAGGcgATGCCACCACATAcgcccattttctgtttaacgcatTTGATCTTGACAGAAATGGCTCGATCCGTTTTGAGGATTTTGTGATTGGTCTGTCCGTGTTGCTGAGAGGAACAGTCACTGAAAAGCTCAACTGGGCTTTCAACCTTTACGACATCAACAAGGATGGATACATCACTAAAGAGGAGATGCTGTTAATTATGAAGTCAATCTACGACATGATGGGAAGGTACACATACCCCAGTGTGCGAGACGAAGCTCCATCTGAACATGTGGAAAAGTTCTTTCAGaaaATGGACAGAAATCGAGACGGTGTGGTCACTATTGAAGAGTTTATTGAGACCTGTCAGAAAGATGAAAACATCATGAACTCCATGCAGCTCTTTGAAAATGTGATATAGCCCGAAAATGGATCACGGTAAAGCTGAAACAGCCGTCAACGTCCTAAAACCAGATCTCTCTATCTGTCTATATACCAAACTAGCACAGCAGTCACTCTCTGTTTTGTCCTGTAGCACTAATCCCATGCCTGCTGCACTCTGTAGAAAACTATAGACCAACACTTAGCCTGCAATATGGCGTCACAATTTATACTTCACAGCGGGACTACTagccaagcaaaaaaaaaaagaagaagagccAGGATGGCTGGGATCCTTCCAGTTGCTAAATACAAGCAACAAAACAATGAAACTTTTAAACCGAATGAACAAACCAAGTAGCAAAGCCACGTTTTGTATATCAGGTTGATGGATTCCCATGGAGTCGCCCACTTCCACATGAAAATCATCACCATTCTGGACTGCTGTCTTCTGCCTTATGAATGAGGGACATTACAAGACTCGATCTCAACCTTC
>TCONS_00070392
CGGAGAAGCTGCTGCTCCTGGAGAGAGTGGAAGAAACGCGTTTCTCCTCAGCGCTTGAGGAGGATTCATCACGAGACACAATGCAGGAGGATGGCAAGGTGGTGGACGGCACTCTGCTGGGTGATGCCAATGGGGTGGAGCCTGGCAGAGGCCGACAGAAGGAAAGTGGCAAATGGCAGAGACCTCGCTTCACACGGAAAGCCCTCATGAGGTGCTGTCTGGTCAAATGGATCATCGCCAGCACTGGACCCAAGGAGCAAGagACAGCAGTGACAGTGACCTTGAGCTGTCCACGGTGCGGCATCAGCCCGAGGGTCTGGAGCAGTTGCAGGCACAGACCAAATTCACCAAGAAGGAGCTGCAGTCCCTATATAGGGGCTTTAAAAATGAGTGCCCAAGTGGTTTGGTTGATGAGGAAACTTTCAAGACCATCTACTCCCAATTCTTTCCCCAAGGcgATGCCACCACATAcgcccattttctgtttaacgcatTTGATCTTGACAGAAATGGCTCGATCCGTTTTGAGGATTTTGTGATTGGTCTGTCCGTGTTGCTGAGAGGAACAGTCACTGAAAAGCTCAACTGGGCTTTCAACCTTTACGACATCAACAAGGATGGATACATCACTAAAGAGGAGATGCTGTTAATTATGAAGTCAATCTACGACATGATGGGAAGGTACACATACCCCAGTGTGCGAGACGAAGCTCCATCTGAACATGTGGAAAAGTTCTTTCAGaaaATGGACAGAAATCGAGACGGTGTGGTCACTATTGAAGAGTTTATTGAGACCTGTCAGAAAGATGAAAACATCATGAACTCCATGCAGCTCTTTGAAAATGTGATATAGCCCGAAAATGGATCACGGTAAAGCTGAAACAGCCGTCAACGTCCTAAAACCAGATCTCTCTATCTGTCTATATACCAAACTAGCACAGCAGTCACTCTCTGTTTTGTCCTGTAGCACTAATCCCATGCCTGCTGCACTCTGTAGAAAACTATAGACCAACACTTAGCCTGCAATATGGCGTCACAATTTATACTTCACAGCGGGACTACTagccaagcaaaaaaaaaaagaagaagagccAGGATGGCTGGGATCCTTCCAGTTGCTAAATACAAGCAACAAAACAATGAAACTTTTAAACCGAATGAACAAACCAAGTAGCAAAGCCACGTTTTGTATATCAGGTTGATGGATTCCCATGGAGTCGCCCACTTCCACATGAAAATCATCACCATTCTGGACTGCTGTCTTCTGCCTTATGAATGAGGGACATTACAAGACTCGATCTCAACCTTC
>TCONS_00070393
ATACAAGAGGATGGCAAGGTGGTGGACGGCACTCTGCTGGGTGATGCCAATGGGGTGGAGCCTGGCAGAGGCCGACAGAAGGAAAGTGGCAAATGGCAGAGACCTCGCTTCACACGGAAAGCCCTCATGAGGTGCTGTCTGGTCAAATGGATCATCGCCAGCACTGGACCCAAGGAGCAAGaatACAGCAGTGACAGTGACCTTGAGCTGTCCACGGTGCGGCATCAGCCCGAGGGTCTGGAGCAGTTGCAGGCACAGACCAAATTCACCAAGAAGGAGCTGCAGTCCCTATATAGGGGCTTTAAAAATGAGTGCCCAAGTGGTTTGGTTGATGAGGAAACTTTCAAGACCATCTACTCCCAATTCTTTCCCCAAGGcgATGCCACCACATAcgcccattttctgtttaacgcatTTGATCTTGACAGAAATGGCTCGATCCGTTTTGAGGATTTTGTGATTGGTCTGTCCGTGTTGCTGAGAGGAACAGTCACTGAAAAGCTCAACTGGGCTTTCAACCTTTACGACATCAACAAGGATGGATACATCACTAAAGAGGAGATGCTGTTAATTATGAAGTCAATCTACGACATGATGGGAAGGTACACATACCCCAGTGTGCGAGACGAAGCTCCATCTGAACATGTGGAAAAGTTCTTTCAGaaaATGGACAGAAATCGAGACGGTGTGGTCACTATTGAAGAGTTTATTGAGACCTGTCAGAAAGATGAAAACATCATGAACTCCATGCAGCTCTTTGAAAATGTGATATAGCCCGAAAATGGATCACGGTAAAGCTGAAACAGCCGTCAACGTCCTAAAACCAGATCTCTCTATCTGTCTATATACCAAACTAGCACAGCAGTCACTCTCTGTTTTGTCCTGTAGCACTAATCCCATGCCTGCTGCACTCTGTAGAAAACTATAGACCAACACTTAGCCTGCAATATGGCGTCACAATTTATACTTCACAGCGGGACTACTagccaagcaaaaaaaaaaagaagaagagccAGGATGGCTGGGATCCTTCCAGTTGCTAAATACAAGCAACAAAACAATGAAACTTTTAAACCGAATGAACAAACCAAGTAGCAAAGCCACGTTTTGTATATCAGGTTGATGGATTCCCATGGAGTCGCCCACTTCCACATGAAAATCATCACCATTCTGGACTGCTGTCTTCTGCCTTATGAATGAGGGACATTACAAGACTCGATCTCAACCTTC
>TCONS_00070394
TCTTCATGTTTCTCAAACTCATGCATCTGCTGGGACTCATAGACATTACTGAGACAGagACAGCAGTGACAGTGACCTTGAGCTGTCCACGGTGCGGCATCAGCCCGAGGGTCTGGAGCAGTTGCAGGCACAGACCAAATTCACCAAGAAGGAGCTGCAGTCCCTATATAGGGGCTTTAAAAATGAGTGCCCAAGTGGTTTGGTTGATGAGGAAACTTTCAAGACCATCTACTCCCAATTCTTTCCCCAAGGcgATGCCACCACATAcgcccattttctgtttaacgcatTTGATCTTGACAGAAATGGCTCGATCCGTTTTGAGGATTTTGTGATTGGTCTGTCCGTGTTGCTGAGAGGAACAGTCACTGAAAAGCTCAACTGGGCTTTCAACCTTTACGACATCAACAAGGATGGATACATCACTAAAGAGGAGATGCTGTTAATTATGAAGTCAATCTACGACATGATGGGAAGGTACACATACCCCAGTGTGCGAGACGAAGCTCCATCTGAACATGTGGAAAAGTTCTTTCAGaaaATGGACAGAAATCGAGACGGTGTGGTCACTATTGAAGAGTTTATTGAGACCTGTCAGAAAGATGAAAACATCATGAACTCCATGCAGCTCTTTGAAAATGTGATATAGCCCGAAAATGGATCACGGTAAAGCTGAAACAGCCGTCAACGTCCTAAAACCAGATCTCTCTATCTGTCTATATACCAAACTAGCACAGCAGTCACTCTCTGTTTTGTCCTGTAGCACTAATCCCATGCCTGCTGCACTCTGTAGAAAACTATAGACCAACACTTAGCCTGCAATATGGCGTCACAATTTATACTTCACAGCGGGACTACTagccaagcaaaaaaaaaaagaagaagagccAGGATGGCTGGGATCCTTCCAGTTGCTAAATACAAGCAACAAAACAATGAAACTTTTAAACCGAATGAACAAACCAAGTAGCAAAGCCACGTTTTGTATATCAGGTTGATGGATTCCCATGGAGTCGCCCACTTCCACATGAAAATCATCACCATTCTGGACTGCTGTCTTCTGCCTTATGAATGAGGGACATTACAAGACTCGATCTCAACCTTC

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009416 response to light stimulus biological_process
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0019842 vitamin binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0016830 carbon-carbon lyase activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-1791 Predicted to enable calcium ion binding activity. Is expressed in nervous system. Orthologous to human KCNIP3 (potassium voltage-gated channel interacting protein 3).

Ensembl:

ensembl_id ENSDARG00000034229

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071963 False 1310 lncRNA 0.47 9 42764234 42907824
TCONS_00070392 False 1309 processed_transcript 0.47 9 42764234 42907824
TCONS_00070393 False 1230 lncRNA 0.46 10 42833993 42907824
TCONS_00070394 True 1105 lncRNA 0.44 8 42892335 42907824

Neighbor

gene id symbol gene type direction distance location
XLOC_035915 zgc:194007 coding upstream 39424 42712747 ~ 42724810 (+)
XLOC_035914 crybb2 coding upstream 127956 42629748 ~ 42636278 (+)
XLOC_035913 NA coding upstream 704619 42052372 ~ 42059615 (+)
XLOC_035912 BX469918.1 coding upstream 776121 41987350 ~ 41988113 (+)
XLOC_035911 NA coding upstream 958676 41794793 ~ 41805558 (+)
XLOC_035917 slc23a2 coding downstream 9691 42917515 ~ 42986689 (+)
XLOC_035918 rassf2a coding downstream 91120 42998944 ~ 43049069 (+)
XLOC_035919 prnpa coding downstream 145695 43053519 ~ 43056975 (+)
XLOC_035920 si:dkey-65l23.2 coding downstream 170220 43078044 ~ 43083693 (+)
XLOC_035921 NA coding downstream 241918 43149742 ~ 43154437 (+)
XLOC_035909 CU326364.1 non-coding upstream 1049468 41710359 ~ 41714766 (+)
XLOC_035907 NA non-coding upstream 1189700 41570932 ~ 41574534 (+)
XLOC_035923 NA non-coding downstream 458634 43366458 ~ 43371282 (+)
XLOC_035925 NA non-coding downstream 1368022 44275846 ~ 44308036 (+)
XLOC_035933 CR931937.1 non-coding downstream 1751989 44659813 ~ 44659927 (+)
XLOC_035936 NA non-coding downstream 1837009 44744833 ~ 44746973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_04494346_04508379 KCNIP3A, KCNIP3 coding CI01000053 null 4494322 ~ 4508640 (-)