XLOC_035936


Basic Information

Item Value
gene id XLOC_035936
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44744833 ~ 44746973 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072261
atgggtgtttcccattactgggttgtggctgggagggcatccgctgcataaaacacatgctggataagttggcgactcGTTCCGCTATGGTGACCTCTGATACATCAGAGcataagctggaaaaaaaaaacaaggcctATGTTTGTCTGTAAGACAGGACTTACctttaagcaggtcgcacaccagaagcgacgctcggcggcgcgccgcgcagcgccatgtattttagaattctaatcataggtttctatcaggatacacacaccggcgccgcaagtcgacggctgtcggcggcgcccggcgacggctcaggacgcagttcatttttcagccgcaccacagagcgccatctgattagtttcatgttaaatatcattcgaatgtgcgcgtctggtgtgcgatactttaatctgtcatgtacgcgccgtgtcgcggcgccgagcggcgcttctggtgtgcgacctgctttagccATGAACTGCTGATTATTTAAGTTGTATGTTATACATAAGCCAACTATTATTTCCTTAAAGGTTGCATGCAATGTTGAAATCTTCAGAAGCAAGAAGTGAGTCATGGCAGTGAAAAGACATCCATCAAACCTGTTTATTAGCTTAATCAAATGGTTCACTGAGGTAGAATCATTTATTTACTGTTGCGCCACATCAGGCAGAAAACACAGTAGCTGCTCATTTTATGCATTTCCTCTTTTAGCACAGATCCAATAAAGAAGGGTGGGATGCAACGGTAATAGAAAAAATTGACTTGGGAATTGTCTGTTGTGGAATAGAAAACTCCTATTGCAACGTAATTTTGCACTTGTCTTATTAGCATGTCAGGAAGTGCTAGCGATGTAGCGTCCCGTTGTTTTAACTCTTTGTTAGAGTTTGTTAATACAGTCTGTAAGATTgcatatgtttgtatatgttacCTAGTCTAAAGTGTTGTACGATACGAGTATGGTTTCAGGTTTCATTTATGCTCTTAttatattctttttcttttcttttcttttctttttgaaaGGATATACGAATATTAACACTCAGTGGATGTATATTAGACGTTCTGTCACTTTACCAGTCagttaaattttatataaagcaGAGTAGTATTTTATAAACTTTAAGAACAAAGCGTGATGGAGAAAGAATGTTCATATGCAGAGGCAAATCATcctttcctatttttttttttttttactggtttgACTCAAACAAGGGTCTTGCTTGTTCAAAGTTCATGAACAATCAAACTTCAAGTAAGAAATCAAGCAATCATCCCTAACCCTGATAATGATTTGAGTCTggtttgtttgtcttgtttttgtttgttttgatgaaAGGGTGGTCTGCTAcatattaatatgtaaatatagaGCAAAATTTCGATTGTAACAGGACATATTATGCATACCTCAGGCTTCAGACAGATATCTTCTGTATAGACAATTTATTGAAGACAGCCATGTTCCCGTGTTGTAGAACAAAATGGTTTTGTGTCTCTTACAGTAATCTACCTAGCTTGGGAATGTACAGTActgaatgcatttgtatgtgaACTAATGTAGCACTGCTATATATTTCTATAGGCCAAACTTGTGAATATTGTAGTCTTATATGCTGAAAAACAACCAAACTTTTGCTGGAGGATGTTTTTAACAATCAAAGCAGTTTGATGTTAAAACAAATCAGAGAATTTGTGGCCTTTGATATTTAATGTGCTTctgatagtatatatatatatatatataatttatttattttttccgcaATGTTACATAAAAGTGAAAAAACTTGAAAGAATCTTTGTTTGGACCAAAAGAAACGTTGGTGTATAGATTTTTATCAACAGATCTTACCGTGCCATTTTGATTTACCCCTTTTCCAGTGTGTTTAAAAGAAAGGATCCAATAAATCTATTAATCTACGCCCATGGAAAAAACggatttcttaaaaaaagacgAACACAATGTGCAAATTGATTCTGTGGGCTGCCCTGAATCGAATAAAACATCCTgcacttcatttaataaatgcattgttacTGTCTACATTCTTCAGAGCGTAATTAATTAAGAAAATATGTGTTAATACAGTGATGTATCGTATGAAGACAAATAAATGCAACTTAAACAACAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0008380 RNA splicing biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072261 True 2141 lncRNA 0.37 1 44744833 44746973

Neighbor

gene id symbol gene type direction distance location
XLOC_035935 elmod3 coding upstream 6479 44714336 ~ 44738354 (+)
XLOC_035934 star coding upstream 36896 44703854 ~ 44707937 (+)
XLOC_035932 grk5l coding upstream 49573 44623540 ~ 44695260 (+)
XLOC_035933 CR931937.1 coding upstream 84906 44659813 ~ 44659927 (+)
XLOC_035931 lsm1 coding upstream 126620 44613135 ~ 44618213 (+)
XLOC_035937 si:ch1073-459j12.1 coding downstream 12603 44759576 ~ 44800841 (+)
XLOC_035938 NA coding downstream 131002 44877975 ~ 44880401 (+)
XLOC_035939 CRAT coding downstream 179656 44926629 ~ 44976455 (+)
XLOC_035940 si:ch211-163b2.4 coding downstream 256686 45003659 ~ 45010555 (+)
XLOC_035941 NA coding downstream 407915 45154888 ~ 45156167 (+)
XLOC_035925 NA non-coding upstream 436797 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1373551 43366458 ~ 43371282 (+)
XLOC_035921 NA non-coding upstream 1590396 43149742 ~ 43154437 (+)
XLOC_035916 NA non-coding upstream 1837009 42764234 ~ 42907824 (+)
XLOC_035943 NA non-coding downstream 476503 45223476 ~ 45224276 (+)
XLOC_035948 NA non-coding downstream 686299 45433272 ~ 45437216 (+)
XLOC_035949 NA non-coding downstream 692648 45439621 ~ 45440571 (+)

Expression


Co-expression Network