XLOC_035932 (grk5l)


Basic Information

Item Value
gene id XLOC_035932
gene name grk5l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44623540 ~ 44695260 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070414
AACAGGAGCTGTATCTATTCTTTGGATTTCACGGCAATATCACGGTGTTTTTTGATGGAGCTGGAGAATATTGTTGCAAACACGGTACTACTGAAGGCAAGAGAGGGTGGAGGAGGTAAGCGGAAAGGAAGAAGTAAGAAATGGAGAGAGATTCTTCGTTTCCCTCATATCAGTCAGTGCACAGAGTTGAACAAAGCCATCGAACGAGACTACGTGTGCCTGTGTGAGAGGCAGCCCATCGGGAGACTTCTGTTCCGCCTCTACTGTGAGACCCAACCAGAGCTTCAGCGATGCATACAACTTCTGGATGCCATGGATGATTACGAGGTATCTCCAGATGAGAAGAGAAAGAGTCGAGGAGATGAGATCATCAAGAAATTTCTCAACAAGCAGTCCTCtgagtgtgtggatgttgctGAAAGTCTTGCTGAAAGATGCAAAGAAAATCTAGAACTGAGCCCCTGCAAGGAAATCTTTAGTGACTGTCGCAAAGCTCTCCATGACTATTTAAGTGGTGCTCCTTTTACTGACTATCAAAACAGCATGTACTTTGATCGCTTCCTCCAATGGAAAATGTTAGAAAGACAGCCCATCACAAAAGACACATTTCGGCAGTACAGAGTTTTGGGAAAAGGAGGCTTTGGAGAGGTGTGTGCTTGCCAGGTGAGAGCAACAGGTAAAATGTATGCTTGTAAAAAGCTGGAGAAAAAAAGGATAAAGAAGAGGAAGGGGGAAGCCATGGCTCTGAATGAAAAACAGATTCTGGAGAAGGTCAACAGCAGGTTTGTGGTTAGTTTAGCATACGCATATGAGACCAAAGATGCTCTGTGTCTGGTGCTGACCATAATGAATGGTGGCGATCTGAAGTTTCATATCTATAACATGGGCACCCCAGGCTTCGAGAAGGAGCGTGTGCAGTTGTATGCTGCCGAGATCTGCTGTGGTCTAGAAGATCTGCACAGAGAGTCTATCATCTACAGGGATTTAAAGCCAGAGAATATACTTTTAGATGATAATGGTCATATCCGAATCTCAGACCTGGGTCTGGCCATTAAAGTACCCGATGGAGAGCAAATTCGTGGCCGAGTGGGGACTGTGGGCTACATGGCTCCAGAGGTGATCAATAACGAGCGGTATAGCATGAGCCCTGACTGGTGGGGGTTGGGTTGCCTGATCTATGAGATGACTGCTGGTCGATCGCCTTTCCGAGCTCGCAAAGAGCGAGTAAAGAGAGAAGACGTGGAGAAGAGGGtgcaggaggaggaagaagagtaCAGTGACAAGTTTTCAGAAGACACCAAAGCCATCTGCAGGATGCTGTTATCCAAAGATCCCAAGCAGAGGCTCGGCTGTCAGACGGACAGAGCTTCTGGAGTCAAAGCCCATCCTTTCTTCAAGAACATCAACTTCAAGAGACTAGAGGCTGGCATTTTGGAACCTTCATTTGTGCCTGACCCCAGGGCCGTCTACTGTAAAGATGTTTTGGACATTGAGCAGTTCTCCACCGTTAAGGGTGTCAACCTGGACCAAACAGACAATGATTTTTACTCGAAGTTTGCCACTGGCAGTGTCTCCATCCCATGGCAAAATGAGATGATTGAAACAGAGTGCTTTAATGACCTTAATGTATTCGGGCCACAAGGGACACGGCCTCCTGACCTGGATTGGAACCAGCCTCCTGAGCCTCCTCGGCGTAGCCTGCTGGACAGGATCTTTAGGAGACATGTGAGGATCTCCTCCACCTCCACCACAGAGGAACACCCCAGAGAACAGAGTAGTTAACTACAGACCAGCGTCCAGAGGTGACCATCACTCAAAGTCGGGTCTTGTCTTCCAGCGTCAACTCTGTTGACTCCGTGACAAACTCTGCCCCCTAGTGGAAAGATTGCTGTGGGACTACAGTGATCAAAAATGCCTGAGTGATATTGTAAGGAGTGAATCCGTATGAGGAACTCGCCTGCTCTTAAAGACCAGTCAAAAGAGAGTGGAAGCACCTGTTTTCCTTGCTGGGCCCACACTATCCATCCACGGCACTCCAGGAGAACAGGAGCAAATCAACTCCCATTTAAAGCTCGTTATCTATCCGTTTAATGACAGCA
>TCONS_00070416
ATGTATATATCAGATTTTCTTGCTTTCATTTGCAGACAGCCCATCACAAAAGACACATTTCGGCAGTACAGAGTTTTGGGAAAAGGAGGCTTTGGAGAGGTGTGTGCTTGCCAGGTGAGAGCAACAGGTAAAATGTATGCTTGTAAAAAGCTGGAGAAAAAAAGGATAAAGAAGAGGAAGGGGGAAGCCATGGCTCTGAATGAAAAACAGATTCTGGAGAAGGTCAACAGCAGGTTTGTGGTTAGTTTAGCATACGCATATGAGACCAAAGATGCTCTGTGTCTGGTGCTGACCATAATGAATGGTGGCGATCTGAAGTTTCATATCTATAACATGGGCACCCCAGGCTTCGAGAAGGAGCGTGTGCAGTTGTATGCTGCCGAGATCTGCTGTGGTCTAGAAGATCTGCACAGAGAGTCTATCATCTACAGGGATTTAAAGCCAGAGAATATACTTTTAGATGATAATGGTCATATCCGAATCTCAGACCTGGGTCTGGCCATTAAAGTACCCGATGGAGAGCAAATTCGTGGCCGAGTGGGGACTGTGGGCTACATGGCTCCAGAGGTGATCAATAACGAGCGGTATAGCATGAGCCCTGACTGGTGGGGGTTGGGTTGCCTGATCTATGAGATGACTGCTGGTCGATCGCCTTTCCGAGCTCGCAAAGAGCGAGTAAAGAGAGAAGACGTGGAGAAGAGGGtgcaggaggaggaagaagagtaCAGTGACAAGTTTTCAGAAGACACCAAAGCCATCTGCAGGATGCTGTTATCCAAAGATCCCAAGCAGAGGCTCGGCTGTCAGACGGACAGAGCTTCTGGAGTCAAAGCCCATCCTTTCTTCAAGAACATCAACTTCAAGAGACTAGAGGCTGGCATTTTGGAACCTTCATTTGTGCCTGACCCCAGGGCCGTCTACTGTAAAGATGTTTTGGACATTGAGCAGTTCTCCACCGTTAAGGGTGTCAACCTGGACCAAACAGACAATGATTTTTACTCGAAGTTTGCCACTGGCAGTGTCTCCATCCCATGGCAAAATGAGGTATGA
>TCONS_00070417
ATGGGCACCCCAGGCTTCGAGAAGGAGCGTGTGCAGTTGTATGCTGCCGAGATCTGCTGTGGTCTAGAAGATCTGCACAGAGAGTCTATCATCTACAGGGATTTAAAGCCAGAGAATATACTTTTAGATGATAATGGTCATATCCGAATCTCAGACCTGGGTCTGGCCATTAAAGTACCCGATGGAGAGCAAATTCGTGGCCGAGTGGGGACTGTGGGCTACATGGCTCCAGAGGTGATCAATAACGAGCGGTATAGCATGAGCCCTGACTGGTGGGGGTTGGGTTGCCTGATCTATGAGATGACTGCTGGTCGATCGCCTTTCCGAGCTCGCAAAGAGCGAGTAAAGAGAGAAGACGTGGAGAAGAGGGtgcaggaggaggaagaagagtaCAGTGACAAGTTTTCAGAAGACACCAAAGCCATCTGCAGGATGCTGTTATCCAAAGATCCCAAGCAGAGGCTCGGCTGTCAGACGGACAGAGCTTCTGGAGTCAAAGCCCATCCTTTCTTCAAGAACATCAACTTCAAGAGACTAGAGGCTGGCATTTTGGAACCTTCATTTGTGCCTGACCCCAGGGCCGTCTACTGTAAAGATGTTTTGGACATTGAGCAGTTCTCCACCGTTAAGGGTGTCAACCTGGACCAAACAGACAATGATTTTTACTCGAAGTTTGCCACTGGCAGTGTCTCCATCCCATGGCAAAATGAGATGATTGAAACAGAGTGCTTTAATGACCTTAATGTATTCGGGCCACAAGGGACACGGCCTCCTGACCTGGATTGGAACCAGCCTCCTGAGCCTCCTCGGCGTAGCCTGCTGGACAGGATCTTTAGGAGACATGTGAGGATCTCCTCCACCTCCACCACAGAGGAACACCCCAGAGAACAGAGTAGTTAA

Function

symbol description
grk5l Predicted to enable protein kinase activity. Acts upstream of or within determination of left/right symmetry; negative regulation of TOR signaling; and regulation of cilium assembly. Located in plasma membrane. Is expressed in several structures, including notochord; otic placode; pronephros; spinal cord; and tail bud. Orthologous to human GRK5 (G protein-coupled receptor kinase 5).

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016310 phosphorylation biological_process
GO:0001947 heart looping biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-95 Predicted to enable protein kinase activity. Acts upstream of or within determination of left/right symmetry; negative regulation of TOR signaling; and regulation of cilium assembly. Located in plasma membrane. Is expressed in several structures, including notochord; otic placode; pronephros; spinal cord; and tail bud. Orthologous to human GRK5 (G protein-coupled receptor kinase 5).

Ensembl:

ensembl_id ENSDARG00000078815

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070414 False 2099 mRNA 0.48 16 44623540 44695260
TCONS_00070416 False 1050 mRNA 0.47 8 44673753 44690335
TCONS_00070417 True 900 mRNA 0.50 7 44677569 44690680

Neighbor

gene id symbol gene type direction distance location
XLOC_035931 lsm1 coding upstream 5327 44613135 ~ 44618213 (+)
XLOC_035930 si:dkey-220o5.5 coding upstream 61955 44549290 ~ 44561585 (+)
XLOC_035929 si:ch73-211l2.3 coding upstream 143084 44475793 ~ 44480456 (+)
XLOC_035928 mhc1laa coding upstream 175117 44442220 ~ 44448423 (+)
XLOC_035927 si:dkey-56i24.1 coding upstream 202122 44420108 ~ 44421418 (+)
XLOC_035934 star coding downstream 8594 44703854 ~ 44707937 (+)
XLOC_035935 elmod3 coding downstream 19076 44714336 ~ 44738354 (+)
XLOC_035936 NA coding downstream 49573 44744833 ~ 44746973 (+)
XLOC_035937 si:ch1073-459j12.1 coding downstream 64316 44759576 ~ 44800841 (+)
XLOC_035938 NA coding downstream 182715 44877975 ~ 44880401 (+)
XLOC_035925 NA non-coding upstream 315504 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1252258 43366458 ~ 43371282 (+)
XLOC_035921 NA non-coding upstream 1469103 43149742 ~ 43154437 (+)
XLOC_035916 NA non-coding upstream 1715716 42764234 ~ 42907824 (+)
XLOC_035913 NA non-coding upstream 2563925 42052372 ~ 42059615 (+)
XLOC_035941 NA non-coding downstream 459628 45154888 ~ 45156167 (+)
XLOC_035943 NA non-coding downstream 528216 45223476 ~ 45224276 (+)
XLOC_035948 NA non-coding downstream 738012 45433272 ~ 45437216 (+)

Expression


Co-expression Network