XLOC_035930 (si:dkey-220o5.5)


Basic Information

Item Value
gene id XLOC_035930
gene name si:dkey-220o5.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44549290 ~ 44561585 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070412
GACTCAGAAAGTAGTCATTATGAGTCATAtggtgaagaggaggaggagtttGTGAAGGACAGAGCTCATTATGTCCATTGGAGGTTTTCTCAACCCACCATACGACCCGATTCAGAGTCACGCATCTGTGGATATCTTTGGAGGAAGAAATGGTTGGGTCATTGGTCCCGTCAGCTCTTCATTATTAAGCAAAACTCACTACTGTGTTTTAAATGTGCTAAAGATCTGCACCCTCTGCTGGACCTAAACCTCATGGGTTGCAACGTGGTCTACAAATTCAAACAGAGTAAGAAGATTCAGCACAAACTGAAAGTGGTGGCTGGTGCTGAAACAGTCATCTTGGGCTTCCAGAGCAGTATACAGGCCAAAGAGTGGAGGAAGGTTATAGAAGATGTTAGTGGCTCCTCTTATTATGAGCCTGGATCCCAAACCTCCTCATCAATCCTGAAGAATGAGAGACTGGAATCTTGCAGTTTAAGTACTATCCTCAATACAGACTCGGATGAAGAGAAAATGTCCAATCTTCTATCTGCAGCTGGCTGTGTAGAAgataaagacaaagacagagTGGCCTTTCTAAAAGTGTTGATGAACTGTCAGTGGCAGAGTTTATGGTGTTGGGTGAAGGACGGGAATCTAAAGATGTATCGTGATGAGGCTTCTTTAGAAATCCCTGAGTACACAGTTCACCTCAGAGGGAGTGATGTTCGACCTGGCCCTGATACAGAACATGCTTACCGCATTACCATCACACAGCATGGAGACCACGTGGTTGTACTAGAGGCAAATTGTGCGGATGATAGAGATCAGTGGGTTCAGCTCCTGCAGGATGAGTGTTCTCATGCAACTTTTTCTCCATA

Function

symbol description
si:dkey-220o5.5 Predicted to enable SH2 domain binding activity and SH3 domain binding activity. Predicted to be active in cytosol.

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042169 SH2 domain binding molecular_function
GO:0035591 signaling adaptor activity molecular_function
GO:0017124 SH3 domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-376 Predicted to enable SH2 domain binding activity and SH3 domain binding activity. Predicted to be active in cytosol.

Ensembl:

ensembl_id ENSDARG00000099211

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070412 True 860 mRNA 0.45 6 44549290 44561585

Neighbor

gene id symbol gene type direction distance location
XLOC_035929 si:ch73-211l2.3 coding upstream 68834 44475793 ~ 44480456 (+)
XLOC_035928 mhc1laa coding upstream 100867 44442220 ~ 44448423 (+)
XLOC_035927 si:dkey-56i24.1 coding upstream 127872 44420108 ~ 44421418 (+)
XLOC_035926 CU914776.2 coding upstream 167050 44358443 ~ 44382240 (+)
XLOC_035925 NA coding upstream 241254 44275846 ~ 44308036 (+)
XLOC_035931 lsm1 coding downstream 51550 44613135 ~ 44618213 (+)
XLOC_035932 grk5l coding downstream 61955 44623540 ~ 44695260 (+)
XLOC_035933 CR931937.1 coding downstream 98228 44659813 ~ 44659927 (+)
XLOC_035934 star coding downstream 142269 44703854 ~ 44707937 (+)
XLOC_035935 elmod3 coding downstream 152751 44714336 ~ 44738354 (+)
XLOC_035923 NA non-coding upstream 1178008 43366458 ~ 43371282 (+)
XLOC_035921 NA non-coding upstream 1394853 43149742 ~ 43154437 (+)
XLOC_035916 NA non-coding upstream 1641466 42764234 ~ 42907824 (+)
XLOC_035913 NA non-coding upstream 2489675 42052372 ~ 42059615 (+)
XLOC_035936 NA non-coding downstream 183248 44744833 ~ 44746973 (+)
XLOC_035938 NA non-coding downstream 316390 44877975 ~ 44880401 (+)
XLOC_035941 NA non-coding downstream 593303 45154888 ~ 45156167 (+)
XLOC_035943 NA non-coding downstream 661891 45223476 ~ 45224276 (+)

Expression


Co-expression Network