XLOC_035928 (mhc1laa)


Basic Information

Item Value
gene id XLOC_035928
gene name mhc1laa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44442220 ~ 44448423 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070408
GGCAGTACTGTATGCAACTCACCAGTGCAGTGTACAATACTAGAAACCAAGAAGAACAACAACATACAGCTGAGCAGACAACGAAGACAACTAAGTATAAGATGATGCTTTTGGAAACACACATGCGccgttttactattttttaatccACATGGATTGAATGTTTTtgagaatgttttgttttgtttgtttgttgccaTTTATTGGCGTCGTTAATGCCGGCTCTCACTCACTGATGGCTTTGGCAACATACATAGTTGGACAGACACCATTTCCTGAGTTCAGTGTTGTGGTGATGTTGGATGACCTGCAGCTAGCATATTATGACTCAATCGGCTGGAAAACGATCTATCGCTCTGGCAGTGATTCAAAATATTACGATGAAGAACAAAGTGATGCTGGTATTGTGTTTCGAGATATGTTTTATGACATGAAAGATCGAGCCTTTTATCTAAAAGATCACCAAAATCACACTGATGGTGTACATGTGCATCAGAGACTCGTTGGCTGTGAGTTGTTAAACAATGAAAAAACTGGTCCACTTCATTACTGGGATGCTTTTGGTGGACAAAATATGGAAGAGTTTATTTTTGACACCGAAAAACATACTATTCAGGTCAAAATGCCATGGGTGATAACATGGGACCAACTCAAGAGGCTTCATGAAAACTTCATGTACGACAATGTGTATCATCCTATTTGCATCAAAACTTTGCGAAGGTACCTGAATATGGAAAAGAAGAATGTGATGAGAAAAGTGAAACCCAGAGTCAGACTCATGCAGAAGAAACTATCAGATTCTCAAGGGCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCGCGTCACATTAATCTGACCCTGTTCAGAGATGCAGAACTTGTGGATGATGATCAGATCACAGGAGGAGAGATTCTGCCCAATGGAGACGGGACGTACCAGATGAGGAAGAGTTTGATCGTAAGTGAAGAAGAGCTGCAGAAAGGACATAAATACAACTGCACCGCAAACTACCTCAATCTGGACAACAAAATGGACATtgtgtttgATGTGGCTGAAAGTGACCCAGGATCCTTCAGTGTGTCAGTAGTGATGGGTGTGCTGGTGTTCGTGGGTTTGTCTGTTCTCAGTATAACTGCACTCATCATGAGGAGAAAAAGACGGGATACTGGTTCAGTTTCTGGGACGTCACAGAATCAGTACGTTTATGCACAAACTTCGGTGCAAGATGCGACATGAACAAGGATCTCAAATCACCTCCAGTTCTGAAGCAGTATACTCACAGTATTATGTCTCCTGTGGATGTCAGACTTTGGGAACAGTTTTAGAAGGAAAACTTTATGAAATCATGAAAATTTCAACTCTGACACACTGCAGTAAGTGTGAATAAACCAGTGACTCAGGAGTTTTCTGCCAAAAAGTAATGttaaactgaattttattatGAGCTATTCTTCAATTTTGCTCCTATGaatcaaatcacttttgttgTCACATCATTAGCAGCACGTaagctatgatgagtgaaaagcttaggtgctggctccagacagttcAAAATACAggtagtgcaaatacaacgacaatgcAAATGTTACGGTCCCTAACTTAAATATGTCTCGTGACCCAAAGAAAACGTAACATAAATAATCAACGGCAAAAGTGctccagctaaattatttattaacataacataACCAGCAAAACAATCTAAATTGACAAGAGATGGGTagcccaacaacataataaagaacaaccaaacaaactTAAGGGAGGTTGGAGCTCCCCACTCCAAA

Function

symbol description
mhc1laa Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Orthologous to human CD1A (CD1a molecule).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-464 Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Orthologous to human CD1A (CD1a molecule).

Ensembl:

ensembl_id ENSDARG00000016056

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070408 True 1797 mRNA 0.40 7 44442220 44448423

Neighbor

gene id symbol gene type direction distance location
XLOC_035927 si:dkey-56i24.1 coding upstream 20802 44420108 ~ 44421418 (+)
XLOC_035926 CU914776.2 coding upstream 59980 44358443 ~ 44382240 (+)
XLOC_035925 NA coding upstream 134184 44275846 ~ 44308036 (+)
XLOC_035924 AL808129.2 coding upstream 588374 43852743 ~ 43853846 (+)
XLOC_035923 NA coding upstream 1070938 43366458 ~ 43371282 (+)
XLOC_035929 si:ch73-211l2.3 coding downstream 27370 44475793 ~ 44480456 (+)
XLOC_035930 si:dkey-220o5.5 coding downstream 100867 44549290 ~ 44561585 (+)
XLOC_035931 lsm1 coding downstream 164712 44613135 ~ 44618213 (+)
XLOC_035932 grk5l coding downstream 175117 44623540 ~ 44695260 (+)
XLOC_035933 CR931937.1 coding downstream 211390 44659813 ~ 44659927 (+)
XLOC_035921 NA non-coding upstream 1287783 43149742 ~ 43154437 (+)
XLOC_035916 NA non-coding upstream 1534396 42764234 ~ 42907824 (+)
XLOC_035913 NA non-coding upstream 2382605 42052372 ~ 42059615 (+)
XLOC_035936 NA non-coding downstream 296410 44744833 ~ 44746973 (+)
XLOC_035938 NA non-coding downstream 429552 44877975 ~ 44880401 (+)
XLOC_035941 NA non-coding downstream 706465 45154888 ~ 45156167 (+)
XLOC_035943 NA non-coding downstream 775053 45223476 ~ 45224276 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_03545885_03548117 NA coding CI01000053 null 3545885 ~ 3548789 (+)