XLOC_035929 (si:ch73-211l2.3)


Basic Information

Item Value
gene id XLOC_035929
gene name si:ch73-211l2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44475793 ~ 44480456 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070409
CAATATCATTTCTGGATAGTGTTGGACTGGTGTTGGATGGGGATCTattatcaTAAATATGGACTGATTGGGGCGTGTGGTGATGCAGATCAGGAAGATTTTATTGTCCAGTTTGATGATGAACAGTTGGCACACGTGGACTTCAAAGAGCAGAAAGATGTTATTACATTACCTGAATTTGCTGGTCAGGCTGTGCTTCCGCCAATATATGTGGATGCTAAAAGGGCAGAATTCAATTGCAAAGCCTACCTGGCTGTGCTTAGAGAGGTGTATGCCAGTTCACCTGAAGTACTTGAACCTCCCTGGAGCTCAATTTATCCTAAAAGTGATCCACAATTAAATCTCAAGAACACTCTGATCTGTCATGTGACTGGATTCTTCCCTCCGCCGGTCAGAGTCTTGTGGACCAAGAACAATGTGAATGTGACAGACGGATCAACCATCAGCAGATATTACCCTAACAAAGATGGCACAATGAATGTCTTTTCTCGACTGAGCTTCATTCCTGAGGAAGGCGACATTTATAGCTGTTCAGTGGAGCACAAAGCTCTTCAGCAACCTCAGACCAGAACATGGGaTGTGGAGGTAAAGCAGCCCAGCATTGGTCCATCAGTGTTCTGTGGAGTTGGTCTTGCTCTCGGGCTACTGGGTTTTGCTACTGGGGTCTTTTTCACTGCAAAGGGAAACAACTGTAACTAA
>TCONS_00070410
AAAACTCTACTGACATGCCGTCGAGTGGCATTTTCTGCTACCTGCACTTACTGTTTGTGATGTACAATGGAGGCATTGTTAAGAATCACactcatctgtgtttgtgtgcaagCTAAAGattatcaTAAATATGGACTGATTGGGGCGTGTGGTGATGCAGATCAGGAAGATTTTATTGTCCAGTTTGATGATGAACAGTTGGCACACGTGGACTTCAAAGAGCAGAAAGATGTTATTACATTACCTGAATTTGCTGGTCAGGCTGTGCTTCCGCCAATATATGTGGATGCTAAAAGGGCAGAATTCAATTGCAAAGCCTACCTGGCTGTGCTTAGAGAGGTGTATGCCAGTTCACCTGAAGTACTTGAACCTCCCTGGAGCTCAATTTATCCTAAAAGTGATCCACAATTAAATCTCAAGAACACTCTGATCTGTCATGTGACTGGATTCTTCCCTCCGCCGGTCAGAGTCTTGTGGACCAAGAACAATGTGAATGTGACAGACGGATCAACCATCAGCAGATATTACCCTAACAAAGATGGCACAATGAATGTCTTTTCTCGACTGAGCTTCATTCCTGAGGAAGGCGACATTTATAGCTGTTCAGTGGAGCACAAAGCTCTTCAGCAACCTCAGACCAGAACATGGGaTGTGGAGGTAAAGCAGCCCAGCATTGGTCCATCAGTGTTCTGTGGAGTTGGTCTTGCTCTCGGGCTACTGGGTTTTGCTACTGGGGTCTTTTTCACTGCAAAGGGAAACAACTGTAACTAATAATTATCCTGAAGCAGACAAAGTGGTGCACACATAAattgtacatactgtataaacTCATGTGATGAACAGAAAACAATTCTTTATTCATTGTAAAGTGCAAGGGCAAAAGAGTTTAGAGGTTTCTCTGAGCAATCTACTGGAATCATTGGTCTAGTACCTTAGAAGTGACTAATATTAAAATTCTAGAAGTCTCACGTGACGGCATAGGGAAGTTTGTGACAAATGCAGAACATATTCTGCTGAAtgcatactgtaaatataaatgttgTAAAATGACACATATTTTTCAATCAGACAGTAAAtagatattattttaatatgcaaatattgCTTTAGTTTGATATTTGATGTATTGTCAGGTGTTTCAGAGAGACATCTTGTTTACCAGAATATACTTAAtgctgtaatttaaaaaaatatatattcaaagaaTGAGCAAGAACCTAA
>TCONS_00070411
ATTTTCTGCTACCTGCACTTACTGTTTGTGATGTACAATGGAGGCATTGTTAAGAATCACactcatctgtgtttgtgtgcaagCTAAAGattatcaTAAATATGGACTGATTGGGGCGTGTGGTGATGCAGATCAGGAAGATTTTATTGTCCAGTTTGATGATGAACAGTTGGCACACGTGGACTTCAAAGAGCAGAAAGATGTTATTACATTACCTGAATTTGCTGGTCAGGCTGTGCTTCCGCCAATATATGTGGATGCTAAAAGGGCAGAATTCAATTGCAAAGCCTACCTGGCTGTGCTTAGAGAGGTGTATGCCAGTTCACCTGAAGTACTTGGTAAGACAAAAATAGGGATAAAAATGAGTCACACTTTATGATAAGTTTGcaatatttactaacatgagctagGAATAATACAGCAACAGATTCTTGTTTGTTAATAtcagttaatgcaccgtgagttaacaagaagtaacaaaaaaaaaaaaaaaaaacgtttattaACTATCATTACAAAAGATGAATCAATACTGTTATAAATATTCTTCATCATTTGTTTGTGATAGTAAATACGATAACTTATACAATCTTATTATAAAGtcttaacaaaaaaatgttttagtaaaatgtttaaaatggtgGTTGATCTAATCTTTGCCAGAACCTCCCTGGAGCTCAATTTATCCTAAAAGTGATCCACAATTAAATCTCAAGAACACTCTGATCTGTCATGTGACTGGATTCTTCCCTCCGCCGGTCAGAGTCTTGTGGACCAAGAACAAT

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-52 Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within adaptive immune response and antigen processing and presentation of peptide or polysaccharide antigen via MHC class II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); gastrointestinal system cancer (multiple); hematologic cancer (multiple); and systemic scleroderma (multiple). Orthologous to several human genes including HLA-DOA (major histocompatibility complex, class II, DO alpha); HLA-DPA1 (major histocompatibility complex, class II, DP alpha 1); and HLA-DQA1 (major histocompatibility complex, class II, DQ alpha 1).

Ensembl:

ensembl_id ENSDARG00000075932

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070409 False 699 mRNA 0.45 4 44475793 44480006
TCONS_00070410 False 1221 mRNA 0.39 4 44478294 44480456
TCONS_00070411 True 785 lncRNA 0.35 2 44478323 44479644

Neighbor

gene id symbol gene type direction distance location
XLOC_035928 mhc1laa coding upstream 27370 44442220 ~ 44448423 (+)
XLOC_035927 si:dkey-56i24.1 coding upstream 54375 44420108 ~ 44421418 (+)
XLOC_035926 CU914776.2 coding upstream 93553 44358443 ~ 44382240 (+)
XLOC_035925 NA coding upstream 167757 44275846 ~ 44308036 (+)
XLOC_035924 AL808129.2 coding upstream 621947 43852743 ~ 43853846 (+)
XLOC_035930 si:dkey-220o5.5 coding downstream 68834 44549290 ~ 44561585 (+)
XLOC_035931 lsm1 coding downstream 132679 44613135 ~ 44618213 (+)
XLOC_035932 grk5l coding downstream 143084 44623540 ~ 44695260 (+)
XLOC_035933 CR931937.1 coding downstream 179357 44659813 ~ 44659927 (+)
XLOC_035934 star coding downstream 223398 44703854 ~ 44707937 (+)
XLOC_035923 NA non-coding upstream 1104511 43366458 ~ 43371282 (+)
XLOC_035921 NA non-coding upstream 1321356 43149742 ~ 43154437 (+)
XLOC_035916 NA non-coding upstream 1567969 42764234 ~ 42907824 (+)
XLOC_035913 NA non-coding upstream 2416178 42052372 ~ 42059615 (+)
XLOC_035936 NA non-coding downstream 264377 44744833 ~ 44746973 (+)
XLOC_035938 NA non-coding downstream 397519 44877975 ~ 44880401 (+)
XLOC_035941 NA non-coding downstream 674432 45154888 ~ 45156167 (+)
XLOC_035943 NA non-coding downstream 743020 45223476 ~ 45224276 (+)

Expression


Co-expression Network