RNA id: TCONS_00070410


Basic Information

Item Value
RNA id TCONS_00070410
length 1221
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_035929
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44475793 ~ 44480456 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACTCTACTGACATGCCGTCGAGTGGCATTTTCTGCTACCTGCACTTACTGTTTGTGATGTACAATGGAGGCATTGTTAAGAATCACactcatctgtgtttgtgtgcaagCTAAAGattatcaTAAATATGGACTGATTGGGGCGTGTGGTGATGCAGATCAGGAAGATTTTATTGTCCAGTTTGATGATGAACAGTTGGCACACGTGGACTTCAAAGAGCAGAAAGATGTTATTACATTACCTGAATTTGCTGGTCAGGCTGTGCTTCCGCCAATATATGTGGATGCTAAAAGGGCAGAATTCAATTGCAAAGCCTACCTGGCTGTGCTTAGAGAGGTGTATGCCAGTTCACCTGAAGTACTTGAACCTCCCTGGAGCTCAATTTATCCTAAAAGTGATCCACAATTAAATCTCAAGAACACTCTGATCTGTCATGTGACTGGATTCTTCCCTCCGCCGGTCAGAGTCTTGTGGACCAAGAACAATGTGAATGTGACAGACGGATCAACCATCAGCAGATATTACCCTAACAAAGATGGCACAATGAATGTCTTTTCTCGACTGAGCTTCATTCCTGAGGAAGGCGACATTTATAGCTGTTCAGTGGAGCACAAAGCTCTTCAGCAACCTCAGACCAGAACATGGGaTGTGGAGGTAAAGCAGCCCAGCATTGGTCCATCAGTGTTCTGTGGAGTTGGTCTTGCTCTCGGGCTACTGGGTTTTGCTACTGGGGTCTTTTTCACTGCAAAGGGAAACAACTGTAACTAATAATTATCCTGAAGCAGACAAAGTGGTGCACACATAAattgtacatactgtataaacTCATGTGATGAACAGAAAACAATTCTTTATTCATTGTAAAGTGCAAGGGCAAAAGAGTTTAGAGGTTTCTCTGAGCAATCTACTGGAATCATTGGTCTAGTACCTTAGAAGTGACTAATATTAAAATTCTAGAAGTCTCACGTGACGGCATAGGGAAGTTTGTGACAAATGCAGAACATATTCTGCTGAAtgcatactgtaaatataaatgttgTAAAATGACACATATTTTTCAATCAGACAGTAAAtagatattattttaatatgcaaatattgCTTTAGTTTGATATTTGATGTATTGTCAGGTGTTTCAGAGAGACATCTTGTTTACCAGAATATACTTAAtgctgtaatttaaaaaaatatatattcaaagaaTGAGCAAGAACCTAA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-52 Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within adaptive immune response and antigen processing and presentation of peptide or polysaccharide antigen via MHC class II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); gastrointestinal system cancer (multiple); hematologic cancer (multiple); and systemic scleroderma (multiple). Orthologous to several human genes including HLA-DOA (major histocompatibility complex, class II, DO alpha); HLA-DPA1 (major histocompatibility complex, class II, DP alpha 1); and HLA-DQA1 (major histocompatibility complex, class II, DQ alpha 1).

Ensembl:

ensembl_id ENSDART00000006898

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072260 lncRNA upstream 170258 44275846 ~ 44308036 (+) True XLOC_035925
TCONS_00072259 lncRNA upstream 1107012 43366458 ~ 43371282 (+) True XLOC_035923
TCONS_00071964 lncRNA upstream 1323857 43149742 ~ 43154437 (+) False XLOC_035921
TCONS_00070418 lncRNA downstream 223398 44703854 ~ 44707487 (+) False XLOC_035934
TCONS_00072261 lncRNA downstream 264377 44744833 ~ 44746973 (+) True XLOC_035936
TCONS_00072262 lncRNA downstream 397519 44877975 ~ 44880401 (+) False XLOC_035938
TCONS_00072263 lncRNA downstream 397524 44877980 ~ 44880401 (+) False XLOC_035938
TCONS_00072265 lncRNA downstream 397528 44877984 ~ 44880401 (+) False XLOC_035938
TCONS_00070408 mRNA upstream 29871 44442220 ~ 44448423 (+) True XLOC_035928
TCONS_00070407 mRNA upstream 56876 44420108 ~ 44421418 (+) True XLOC_035927
TCONS_00070406 mRNA upstream 96054 44358443 ~ 44382240 (+) True XLOC_035926
TCONS_00070405 mRNA upstream 97610 44358443 ~ 44380684 (+) False XLOC_035926
TCONS_00070404 mRNA upstream 624448 43852743 ~ 43853846 (+) True XLOC_035924
TCONS_00070412 mRNA downstream 68834 44549290 ~ 44561585 (+) True XLOC_035930
TCONS_00070413 mRNA downstream 132679 44613135 ~ 44618213 (+) True XLOC_035931
TCONS_00070414 mRNA downstream 143084 44623540 ~ 44695260 (+) False XLOC_035932
TCONS_00070416 mRNA downstream 193297 44673753 ~ 44690335 (+) False XLOC_035932
TCONS_00070417 mRNA downstream 197113 44677569 ~ 44690680 (+) True XLOC_035932
TCONS_00070398 other upstream 1439834 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070392 other upstream 1570470 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070387 other upstream 1754470 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070385 other upstream 1842281 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070381 other upstream 2490181 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070415 other downstream 179357 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070426 other downstream 478831 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070440 other downstream 881279 45361735 ~ 45374450 (+) False XLOC_035946
TCONS_00070445 other downstream 1128084 45608540 ~ 45610783 (+) True XLOC_035954
TCONS_00070452 other downstream 1577688 46058144 ~ 46064537 (+) True XLOC_035960

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_03484560_03485959.mRNA True 1002 mRNA 0.39 4 CI01000052 3484560 ~ 3486253 (+)