RNA id: TCONS_00072262


Basic Information

Item Value
RNA id TCONS_00072262
length 2427
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_035938
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44877975 ~ 44880401 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGTTGCGTCAGCCTCAGTTGGAGTCCAGACGCTGACGGGGAAAGACATGCAATATGGGAGTAGTAGGTAATGAAGAGGCAGACCAACTTGCAAAGGAAGCATTACAACATAatcaaatagaaataaaaataagtcagaggtaaaaagaaaaaaacataattgtaAAAGAAACAGGTAGAATGTGGCAAAGGGAGTGGGATAATGGAGAAAAAGGCAGACATATGCATAATATTCAAGGATGTGTGGGTGGTACTAGAAATAAGTTTGGTAATAGAAGGAATGATGTGGTGATAACTAGGTTGCGTGTTGGTCATTGTTTGCTAAACCAGTAAAAGTTTAGAATAGGGAAGCATGAGACAGGATGTTGTGATAAATGCGGGAAAATAGAAACATTAGAACATGTAATTACAGAATGTGTGGCATATGAAAATCAGAGATATCAATGAGTTCAAGGATTAAGCATTTATGGGattaaaaatttgtcatttcAGACACTATTAGGAAACGGTTCAAATCAAGttaaaataatgcaattaattaattacttaaaggAAACAAAATTGATTAATAGAATTTAAGAATAGCTTAGCAAAATAAGGAATTAAAATTTGATATGGTATTTAActagtattttttttcctttttttttctcctctcctCCTACTCTTCTTCCTGTTCTCTCTTCCCTTTGGTAATCTCATCCCTCCATTCATATCATATATCTTTTGTACTCACTCCTATCCAGTAGGTGGCGGAAATGCACCATAAGTTGGTCTGCCAACCGCCATTAACcccataagaagaagaagaagaaagacatGCAAAAGTTTCTCCTGCACTTGTGTTCGTATTGGTATGTTTAATATAGTCTGTTCGATTTGAAGTTCATATAATGTTGCATAAAATATGTTTAGGATCGTTTTTATTCAGTCCGATTATAATATTGAGAAGATTCTGAGATTTATGTGAGTTTAAAGGAGGGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGTATTTTTCATGTAAAACTGTTATTTGTGAATCTTTTTATGATGTTTTATCATTCTAATTGTTCTCAAAAATTAATAATTGACTATCTGAATCTAAATTGTGCTTTTATGTCATGGTATATTGCATGGTGAATAAGCCTAATTGTTTGAGAACattatgttctgtttttttttttttgagaatataAAATTGATCTAAtactttaagtacaaatgtaaaGAGCAACACcacttattttctttttattttatttaaacaaatacatgttttttttttgtgattattattgTACAATGTTAAACAGTCAGCCTCAGTCGGAGTCCAGACGCTGACGGGGAAAGACGTGCAAAAGTTTCTCCTGCACTTGTGTTCgtattgtgtgtgtgaaaggaGAGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGGACCAATAAAAAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTTTGATTGTTTGTTATGTACAGATTGGGATCTGCTACACCGGCactgtttgtaactttttttaaatacctttttCTGCCAAGGACTGCTCTATTTTTAGAAAACCTtttcgttttttcttttttaccttcTTGATGTTGTATTTTTCTCTCTGCCCAAATATCAATCTGCGCAAATGTTTCCTCCACAGACCAAACTGTATcggcattatttatttttttatgtaaattacaGCGTTGTCGTTTACTTGTCTGATGACTAGTGCGCTTCTgttgagccagctgtggtagcttggcAACAGAGCCGCGATGACAACACACAGAATTTGTCGGCACAATTCCGAGAATGATTTGTAATCGTGCCGcaccgttccaggctcagtggagaaacaaccataACCGCACCGAAGTGTTCTAAGAACAGTTCGGCAGGATAGTGGAAAAGTGGCTAATGTGTGCAGTTTAGCAAAATATTGGTCAAAAGTCATGTCTTGTTTTTGGTCTGGTTTCAAATTTGTATCTTTCAAATGTGACAGTTTTGCTTGGTAAAAAGTGTTCCTCAAATTTTGTTATGAGAACAGTCAATGTTAAATTAGCTTCATCCAATTGAAAGCTATTGTATATATCCAGAGCATCCTCCCCCTTATGCAATCTCTCTCGGCTGTTTTCACAAACGGGTTGCGCTCTCTATGGATTGGGGTTCACTAAGTGTTTTCAAATTACCAACATCCTGGCATCCGCTAGTCTCCATTTCTGACACCACGTTGTGTTATTAACGCCACAGGACTGTTGTCTCTTGTGCAGACACTCACAAGTTGTCTTCAGGCACTGTCAAGCTGTCTGACATAACACACTGACATACCTCTGTGGTTCTTAATACATCTCTTTTTTTGTGTGAGCTGCCATGCAAT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072261 lncRNA upstream 131002 44744833 ~ 44746973 (+) True XLOC_035936
TCONS_00070418 lncRNA upstream 170488 44703854 ~ 44707487 (+) False XLOC_035934
TCONS_00070411 lncRNA upstream 398331 44478323 ~ 44479644 (+) True XLOC_035929
TCONS_00072260 lncRNA upstream 569939 44275846 ~ 44308036 (+) True XLOC_035925
TCONS_00072259 lncRNA upstream 1506693 43366458 ~ 43371282 (+) True XLOC_035923
TCONS_00070424 lncRNA downstream 46228 44926629 ~ 44928382 (+) False XLOC_035939
TCONS_00072267 lncRNA downstream 274487 45154888 ~ 45156167 (+) True XLOC_035941
TCONS_00071966 lncRNA downstream 343075 45223476 ~ 45224276 (+) True XLOC_035943
TCONS_00072268 lncRNA downstream 552871 45433272 ~ 45437216 (+) True XLOC_035948
TCONS_00072269 lncRNA downstream 559220 45439621 ~ 45440571 (+) True XLOC_035949
TCONS_00070423 mRNA upstream 77134 44783424 ~ 44800841 (+) True XLOC_035937
TCONS_00070422 mRNA upstream 77282 44759576 ~ 44800693 (+) False XLOC_035937
TCONS_00070420 mRNA upstream 139621 44714336 ~ 44738354 (+) False XLOC_035935
TCONS_00070421 mRNA upstream 139998 44722140 ~ 44737977 (+) True XLOC_035935
TCONS_00070419 mRNA upstream 170038 44703864 ~ 44707937 (+) True XLOC_035934
TCONS_00070425 mRNA downstream 46545 44926946 ~ 44976455 (+) False XLOC_035939
TCONS_00070427 mRNA downstream 123258 45003659 ~ 45010555 (+) False XLOC_035940
TCONS_00070428 mRNA downstream 124265 45004666 ~ 45006486 (+) False XLOC_035940
TCONS_00070429 mRNA downstream 124596 45004997 ~ 45008080 (+) True XLOC_035940
TCONS_00070430 mRNA downstream 306588 45186989 ~ 45192728 (+) True XLOC_035942
TCONS_00070415 other upstream 218048 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070398 other upstream 1839515 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070392 other upstream 1970151 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070387 other upstream 2154151 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070385 other upstream 2241962 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070426 other downstream 78886 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070440 other downstream 481334 45361735 ~ 45374450 (+) False XLOC_035946
TCONS_00070445 other downstream 728139 45608540 ~ 45610783 (+) True XLOC_035954
TCONS_00070452 other downstream 1177743 46058144 ~ 46064537 (+) True XLOC_035960
TCONS_00070463 other downstream 1886028 46766429 ~ 46766545 (+) True XLOC_035971

Expression Profile

//