XLOC_035938


Basic Information

Item Value
gene id XLOC_035938
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44877975 ~ 44880401 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072262
GGAGAGTTGCGTCAGCCTCAGTTGGAGTCCAGACGCTGACGGGGAAAGACATGCAATATGGGAGTAGTAGGTAATGAAGAGGCAGACCAACTTGCAAAGGAAGCATTACAACATAatcaaatagaaataaaaataagtcagaggtaaaaagaaaaaaacataattgtaAAAGAAACAGGTAGAATGTGGCAAAGGGAGTGGGATAATGGAGAAAAAGGCAGACATATGCATAATATTCAAGGATGTGTGGGTGGTACTAGAAATAAGTTTGGTAATAGAAGGAATGATGTGGTGATAACTAGGTTGCGTGTTGGTCATTGTTTGCTAAACCAGTAAAAGTTTAGAATAGGGAAGCATGAGACAGGATGTTGTGATAAATGCGGGAAAATAGAAACATTAGAACATGTAATTACAGAATGTGTGGCATATGAAAATCAGAGATATCAATGAGTTCAAGGATTAAGCATTTATGGGattaaaaatttgtcatttcAGACACTATTAGGAAACGGTTCAAATCAAGttaaaataatgcaattaattaattacttaaaggAAACAAAATTGATTAATAGAATTTAAGAATAGCTTAGCAAAATAAGGAATTAAAATTTGATATGGTATTTAActagtattttttttcctttttttttctcctctcctCCTACTCTTCTTCCTGTTCTCTCTTCCCTTTGGTAATCTCATCCCTCCATTCATATCATATATCTTTTGTACTCACTCCTATCCAGTAGGTGGCGGAAATGCACCATAAGTTGGTCTGCCAACCGCCATTAACcccataagaagaagaagaagaaagacatGCAAAAGTTTCTCCTGCACTTGTGTTCGTATTGGTATGTTTAATATAGTCTGTTCGATTTGAAGTTCATATAATGTTGCATAAAATATGTTTAGGATCGTTTTTATTCAGTCCGATTATAATATTGAGAAGATTCTGAGATTTATGTGAGTTTAAAGGAGGGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGTATTTTTCATGTAAAACTGTTATTTGTGAATCTTTTTATGATGTTTTATCATTCTAATTGTTCTCAAAAATTAATAATTGACTATCTGAATCTAAATTGTGCTTTTATGTCATGGTATATTGCATGGTGAATAAGCCTAATTGTTTGAGAACattatgttctgtttttttttttttgagaatataAAATTGATCTAAtactttaagtacaaatgtaaaGAGCAACACcacttattttctttttattttatttaaacaaatacatgttttttttttgtgattattattgTACAATGTTAAACAGTCAGCCTCAGTCGGAGTCCAGACGCTGACGGGGAAAGACGTGCAAAAGTTTCTCCTGCACTTGTGTTCgtattgtgtgtgtgaaaggaGAGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGGACCAATAAAAAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTTTGATTGTTTGTTATGTACAGATTGGGATCTGCTACACCGGCactgtttgtaactttttttaaatacctttttCTGCCAAGGACTGCTCTATTTTTAGAAAACCTtttcgttttttcttttttaccttcTTGATGTTGTATTTTTCTCTCTGCCCAAATATCAATCTGCGCAAATGTTTCCTCCACAGACCAAACTGTATcggcattatttatttttttatgtaaattacaGCGTTGTCGTTTACTTGTCTGATGACTAGTGCGCTTCTgttgagccagctgtggtagcttggcAACAGAGCCGCGATGACAACACACAGAATTTGTCGGCACAATTCCGAGAATGATTTGTAATCGTGCCGcaccgttccaggctcagtggagaaacaaccataACCGCACCGAAGTGTTCTAAGAACAGTTCGGCAGGATAGTGGAAAAGTGGCTAATGTGTGCAGTTTAGCAAAATATTGGTCAAAAGTCATGTCTTGTTTTTGGTCTGGTTTCAAATTTGTATCTTTCAAATGTGACAGTTTTGCTTGGTAAAAAGTGTTCCTCAAATTTTGTTATGAGAACAGTCAATGTTAAATTAGCTTCATCCAATTGAAAGCTATTGTATATATCCAGAGCATCCTCCCCCTTATGCAATCTCTCTCGGCTGTTTTCACAAACGGGTTGCGCTCTCTATGGATTGGGGTTCACTAAGTGTTTTCAAATTACCAACATCCTGGCATCCGCTAGTCTCCATTTCTGACACCACGTTGTGTTATTAACGCCACAGGACTGTTGTCTCTTGTGCAGACACTCACAAGTTGTCTTCAGGCACTGTCAAGCTGTCTGACATAACACACTGACATACCTCTGTGGTTCTTAATACATCTCTTTTTTTGTGTGAGCTGCCATGCAAT
>TCONS_00072263
GTTGCGTCAGCCTCAGTTGGAGTCCAGACGCTGACGGGGAAAGACATGCAATATGGGAGTAGTAGTAGGTGGCGGAAATGCACCATAAGTTGGTCTGCCAACCGCCATTAACcccataagaagaagaagaagaaagacatGCAAAAGTTTCTCCTGCACTTGTGTTCGTATTGGGACCAATAAAAAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTTTGATTGTTTGTTATGTACAGATTGGGATCTGCTACACCGGCactgtttgtaactttttttaaatacctttttCTGCCAAGGACTGCTCTATTTTTAGAAAACCTtttcgttttttcttttttaccttcTTGATGTTGTATTTTTCTCTCTGCCCAAATATCAATCTGCGCAAATGTTTCCTCCACAGACCAAACTGTATcggcattatttatttttttatgtaaattacaGCGTTGTCGTTTACTTGTCTGATGACTAGTGCGCTTCTgttgagccagctgtggtagcttggcAACAGAGCCGCGATGACAACACACAGAATTTGTCGGCACAATTCCGAGAATGATTTGTAATCGTGCCGcaccgttccaggctcagtggagaaacaaccataACCGCACCGAAGTGTTCTAAGAACAGTTCGGCAGGATAGTGGAAAAGTGGCTAATGTGTGCAGTTTAGCAAAATATTGGTCAAAAGTCATGTCTTGTTTTTGGTCTGGTTTCAAATTTGTATCTTTCAAATGTGACAGTTTTGCTTGGTAAAAAGTGTTCCTCAAATTTTGTTATGAGAACAGTCAATGTTAAATTAGCTTCATCCAATTGAAAGCTATTGTATATATCCAGAGCATCCTCCCCCTTATGCAATCTCTCTCGGCTGTTTTCACAAACGGGTTGCGCTCTCTATGGATTGGGGTTCACTAAGTGTTTTCAAATTACCAACATCCTGGCATCCGCTAGTCTCCATTTCTGACACCACGTTGTGTTATTAACGCCACAGGACTGTTGTCTCTTGTGCAGACACTCACAAGTTGTCTTCAGGCACTGTCAAGCTGTCTGACATAACACACTGACATACCTCTGTGGTTCTTAATACATCTCTTTTTTTGTGTGAGCTGCCATGCAAT
>TCONS_00072265
CGTCAGCCTCAGTTGGAGTCCAGACGCTGACGGGGAAAGACATGCAATATGGGAGTAGTAGTAGGTGGCGGAAATGCACCATAAGTTGGTCTGCCAACCGCCATTAACcccataagaagaagaagaagaaagacatGCAAAAGTTTCTCCTGCACTTGTGTTCGTATTGGTATGTTTAATATAGTCTGTTCGATTTGAAGTTCATATAATGTTGCATAAAATATGTTTAGGATCGTTTTTATTCAGTCCGATTATAATATTGAGAAGATTCTGAGATTTATGTGAGTTTAAAGGAGGGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGTATTTTTCATGTAAAACTGTTATTTGTGAATCTTTTTATGATGTTTTATCATTCTAATTGTTCTCAAAAATTAATAATTGACTATCTGAATCTAAATTGTGCTTTTATGTCATGGTATATTGCATGGTGAATAAGCCTAATTGTTTGAGAACattatgttctgtttttttttttttgagaatataAAATTGATCTAAtactttaagtacaaatgtaaaGAGCAACACcacttattttctttttattttatttaaacaaatacatgttttttttttgtgattattattgTACAATGTTAAACAGTCAGCCTCAGTCGGAGTCCAGACGCTGACGGGGAAAGACGTGCAAAAGTTTCTCCTGCACTTGTGTTCgtattgtgtgtgtgaaaggaGAGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGGACCAATAAAAAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTTTGATTGTTTGTTATGTACAGATTGGGATCTGCTACACCGGCactgtttgtaactttttttaaatacctttttCTGCCAAGGACTGCTCTATTTTTAGAAAACCTtttcgttttttcttttttaccttcTTGATGTTGTATTTTTCTCTCTGCCCAAATATCAATCTGCGCAAATGTTTCCTCCACAGACCAAACTGTATcggcattatttatttttttatgtaaattacaGCGTTGTCGTTTACTTGTCTGATGACTAGTGCGCTTCTgttgagccagctgtggtagcttggcAACAGAGCCGCGATGACAACACACAGAATTTGTCGGCACAATTCCGAGAATGATTTGTAATCGTGCCGcaccgttccaggctcagtggagaaacaaccataACCGCACCGAAGTGTTCTAAGAACAGTTCGGCAGGATAGTGGAAAAGTGGCTAATGTGTGCAGTTTAGCAAAATATTGGTCAAAAGTCATGTCTTGTTTTTGGTCTGGTTTCAAATTTGTATCTTTCAAATGTGACAGTTTTGCTTGGTAAAAAGTGTTCCTCAAATTTTGTTATGAGAACAGTCAATGTTAAATTAGCTTCATCCAATTGAAAGCTATTGTATATATCCAGAGCATCCTCCCCCTTATGCAATCTCTCTCGGCTGTTTTCACAAACGGGTTGCGCTCTCTATGGATTGGGGTTCACTAAGTGTTTTCAAATTACCAACATCCTGGCATCCGCTAGTCTCCATTTCTGACACCACGTTGTGTTATTAACGCCACAGGACTGTTGTCTCTTGTGCAGACACTCACAAGTTGTCTTCAGGCACTGTCAAGCTGTCTGACATAACACACTGACATACCTCTGTGGTTCTTAATACATCTCTTTTTTTGTGTGAGCTGCCATGCAAT
>TCONS_00072264
CGTCAGCCTCAGTTGGAGTCCAGACGCTGACGGGGAAAGACATGCAATATGGGAGTAGTAGTAGGTGGCGGAAATGCACCATAAGTTGGTCTGCCAACCGCCATTAACcccataagaagaagaagaagaaagacatGCAAAAGTTTCTCCTGCACTTGTGTTCGTATTGGTATGTTTAATATAGTCTGTTCGATTTGAAGTTCATATAATGTTGCATAAAATATGTTTAGGATCGTTTTTATTCAGTCCGATTATAATATTGAGAAGATTCTGAGATTTATGTGAGTTTAAAGGAGGGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGTCAGCCTCAGTCGGAGTCCAGACGCTGACGGGGAAAGACGTGCAAAAGTTTCTCCTGCACTTGTGTTCgtattgtgtgtgtgaaaggaGAGGAAAGCGTGGAGAGAGTTTCTGATTGAGTGTCCCACATGTGTTTCAGGGACCAATAAAAAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTTTGATTGTTTGTTATGTACAGATTGGGATCTGCTACACCGGCactgtttgtaactttttttaaatacctttttCTGCCAAGGACTGCTCTATTTTTAGAAAACCTtttcgttttttcttttttaccttcTTGATGTTGTATTTTTCTCTCTGCCCAAATATCAATCTGCGCAAATGTTTCCTCCACAGACCAAACTGTATcggcattatttatttttttatgtaaattacaGCGTTGTCGTTTACTTGTCTGATGACTAGTGCGCTTCTgttgagccagctgtggtagcttggcAACAGAGCCGCGATGACAACACACAGAATTTGTCGGCACAATTCCGAGAATGATTTGTAATCGTGCCGcaccgttccaggctcagtggagaaacaaccataACCGCACCGAAGTGTTCTAAGAACAGTTCGGCAGGATAGTGGAAAAGTGGCTAATGTGTGCAGTTTAGCAAAATATTGGTCAAAAGTCATGTCTTGTTTTTGGTCTGGTTTCAAATTTGTATCTTTCAAATGTGACAGTTTTGCTTGGTAAAAAGTGTTCCTCAAATTTTGTTATGAGAACAGTCAATGTTAAATTAGCTTCATCCAATTGAAAGCTATTGTATATATCCAGAGCATCCTCCCCCTTATGCAATCTCTCTCGGCTGTTTTCACAAACGGGTTGCGCTCTCTATGGATTGGGGTTCACTAAGTGTTTTCAAATTACCAACATCCTGGCATCCGCTAGTCTCCATTTCTGACACCACGTTGTGTTATTAACGCCACAGGACTGTTGTCTCTTGTGCAGACACTCACAAGTTGTCTTCAGGCACTGTCAAGCTGTCTGACATAACACACTGACATACCTCTGTGGTTCTTAATACATCTCTTTTTTTGTGTGAGCTGCCATGCAAT
>TCONS_00072266
CAGACGCTGACGGGGAAAGACATGCAATATGGGAGTAGTAGGTAATGAAGAGGCAGACCAACTTGCAAAGGAAGCATTACAACATAatcaaatagaaataaaaataagtcagagTAGGTGGCGGAAATGCACCATAAGTTGGTCTGCCAACCGCCATTAACcccataagaagaagaagaagaaagacatGCAAAAGTTTCTCCTGCACTTGTGTTCGTATTGGGACCAATAAAAAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTTTGATTGTTTGTTATGTACAGATTGGGATCTGCTACACCGGCactgtttgtaactttttttaaatacctttttCTGCCAAGGACTGCTCTATTTTTAGAAAACCTtttcgttttttcttttttaccttcTTGATGTTGTATTTTTCTCTCTGCCCAAATATCAATCTGCGCAAATGTTTCCTCCACAGACCAAACTGTATcggcattatttatttttttatgtaaattacaGCGTTGTCGTTTACTTGTCTGATGACTAGTGCGCTTCTgttgagccagctgtggtagcttggcAACAGAGCCGCGATGACAACACACAGAATTTGTCGGCACAATTCCGAGAATGATTTGTAATCGTGCCGcaccgttccaggctcagtggagaaacaaccataACCGCACCGAAGTGTTCTAAGAACAGTTCGGCAGGATAGTGGAAAAGTGGCTAATGTGTGCAGTTTAGCAAAATATTGGTCAAAAGTCATGTCTTGTTTTTGGTCTGGTTTCAAATTTGTATCTTTCAAATGTGACAGTTTTGCTTGGTAAAAAGTGTTCCTCAAATTTTGTTATGAGAACAGTCAATGTTAAATTAGCTTCATCCAATTGAAAGCTATTGTATATATCCAGAGCATCCTCCCCCTTATGCAATCTCTCTCGGCTGTTTTCACAAACGGGTTGCGCTCTCTATGGATTGGGGTTCACTAAGTGTTTTCAAATTACCAACATCCTGGCATCCGCTAGTCTCCATTTCTGACACCACGTTGTGTTATTAACGCCACAGGACTGTTGTCTCTTGTGCAGACACTCACAAGTTGTCTTCAGGCACTGTCAAGCTGTCTGACATAACACACTGACATACCTCTGTGGTTCTTAATACATCTCTTTTTTTGTGTGAGCTGCCATGCAAT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072262 False 2427 lncRNA 0.37 1 44877975 44880401
TCONS_00072263 False 1125 lncRNA 0.42 3 44877980 44880401
TCONS_00072265 False 1739 lncRNA 0.38 2 44877984 44880401
TCONS_00072264 False 1435 lncRNA 0.42 3 44877984 44880401
TCONS_00072266 True 1174 lncRNA 0.41 3 44878004 44880401

Neighbor

gene id symbol gene type direction distance location
XLOC_035937 si:ch1073-459j12.1 coding upstream 77134 44759576 ~ 44800841 (+)
XLOC_035936 NA coding upstream 131002 44744833 ~ 44746973 (+)
XLOC_035935 elmod3 coding upstream 139621 44714336 ~ 44738354 (+)
XLOC_035934 star coding upstream 170038 44703854 ~ 44707937 (+)
XLOC_035932 grk5l coding upstream 182715 44623540 ~ 44695260 (+)
XLOC_035939 CRAT coding downstream 46228 44926629 ~ 44976455 (+)
XLOC_035940 si:ch211-163b2.4 coding downstream 123258 45003659 ~ 45010555 (+)
XLOC_035941 NA coding downstream 274487 45154888 ~ 45156167 (+)
XLOC_035942 si:ch211-220m6.4 coding downstream 306588 45186989 ~ 45192728 (+)
XLOC_035943 NA coding downstream 343075 45223476 ~ 45224276 (+)
XLOC_035933 CR931937.1 non-coding upstream 218048 44659813 ~ 44659927 (+)
XLOC_035925 NA non-coding upstream 569939 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1506693 43366458 ~ 43371282 (+)
XLOC_035921 NA non-coding upstream 1723538 43149742 ~ 43154437 (+)
XLOC_035948 NA non-coding downstream 552871 45433272 ~ 45437216 (+)
XLOC_035949 NA non-coding downstream 559220 45439621 ~ 45440571 (+)
XLOC_035950 CU695141.2 non-coding downstream 564092 45444493 ~ 45445030 (+)

Expression


Co-expression Network