XLOC_035941


Basic Information

Item Value
gene id XLOC_035941
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45154888 ~ 45156167 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072267
AAGCACCGCTTGTGCGTCACTACCGGAGTCCCGCTGGTCCCGCCTCTGCCCCTTCCGTTCCTGCAGGTAGACATTGTTTTGCTTTCCCTTTAGCGTCGGGTTGCGTAGTGGGTTTTAACTGGCTGTATTTAACTTCTTAGCATCTGCGGATCAGATTGGCTGTAGCCTGTGTTGCTGTCACCCCAGCTGGATCGCTTTTGTAATTCCTGGGCTGTGGTTTAATCTACAACTGCGTCCGTGAGTGCGGGTTGCTAAGTGACTTGCATACTTGAGGTATGTACGTTACGCTTTTAATAATTATCCGCCGATCTGTCCAGCGACTTAATGTCTTGTCCTTTTTAGGAAGAATAACTGCGTGTGGGCACGCCGAGGGAGCAACATTAGTGATATTGCTGCTTTTTTACGGACCGCTGTCTTTTTACAGACCGCTGCTTTACAGACCACTGCTTTCTAGACTGCTGCTTTATAAACTGCTGCTTCATACTGCTGCTTTACAGACCACTGCTTTCTTTTTAACCACTATTGATCGCGGATTTGACACGTACGGCTGCATATTGCTGCTTTGAGTCCGTTTGCTGTGTGCTTCTCATTTTCTGATGCCGGATTAATGTGCGAGCCTCAACGTAAAAGATGCCTACTATAGTGCTGTGAATAACAGACTCAAATTGCCTTCACATGGAGTACTTGCACACGAGTAGTAGCCGATACATTTTTAGTGCGTGGATTCATTTTGTGCTTTTTgggtttcattatttttctttttggtaCCTAATTCATTGTGTGATTTGTGCTTCCTGTGGGAAGTTTATTCTTTTTgagttaattgatttattattattaatattactgtttttttagtTTCTATTGCAAGGAGATTTTTATGAATCTCTCTTGGGGAATTTCTGTGTTCTTTTGTGTAAGATTGTGACTTTACAATtgttaattgtcatttttgttttgtaggaGCTGAGGCTTCCAGGCAGGCCGTTAGTTGTCCATCGTGCGGTGGTGGGATACGACActgagtgcagtgtgtgtgttgtgtgctcacgtatgcttgtgtgcgtgtgtgtggtgcACTTGCGGTAAGACCATTTGTAATTTTGTAGAGTTTGGTGCTACGTAACTAGCTTACCTGCCACTGGTAAGCCTCTACTCCTCCTCCTGTTGTTATTGTGTGTTATTTATGTGATTGTGCGGCTACTATCAGCTATCAagctttttaaaagtgatttatattggataattaaggaaaataaagtatttttgtatTCTTGGTA

Function

GO:

id name namespace
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0060182 apelin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072267 True 1280 lncRNA 0.43 1 45154888 45156167

Neighbor

gene id symbol gene type direction distance location
XLOC_035940 si:ch211-163b2.4 coding upstream 144333 45003659 ~ 45010555 (+)
XLOC_035939 CRAT coding upstream 178433 44926629 ~ 44976455 (+)
XLOC_035938 NA coding upstream 274487 44877975 ~ 44880401 (+)
XLOC_035937 si:ch1073-459j12.1 coding upstream 354047 44759576 ~ 44800841 (+)
XLOC_035936 NA coding upstream 407915 44744833 ~ 44746973 (+)
XLOC_035942 si:ch211-220m6.4 coding downstream 30822 45186989 ~ 45192728 (+)
XLOC_035943 NA coding downstream 67309 45223476 ~ 45224276 (+)
XLOC_035944 ubap2b coding downstream 137576 45293743 ~ 45328652 (+)
XLOC_035945 pabpc1l coding downstream 178088 45334255 ~ 45352219 (+)
XLOC_035946 chmp4bb coding downstream 205568 45361735 ~ 45375108 (+)
XLOC_035933 CR931937.1 non-coding upstream 494961 44659813 ~ 44659927 (+)
XLOC_035925 NA non-coding upstream 846852 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1783606 43366458 ~ 43371282 (+)
XLOC_035948 NA non-coding downstream 277105 45433272 ~ 45437216 (+)
XLOC_035949 NA non-coding downstream 283454 45439621 ~ 45440571 (+)
XLOC_035950 CU695141.2 non-coding downstream 288326 45444493 ~ 45445030 (+)
XLOC_035951 NA non-coding downstream 292703 45448870 ~ 45451410 (+)

Expression


Co-expression Network