XLOC_035944 (ubap2b)


Basic Information

Item Value
gene id XLOC_035944
gene name ubap2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45293743 ~ 45328652 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070431
GGCTTCACGCCGTTGTATGAGGGGGAAACGCGTGCGGTCAGTGGGCAGGTAAAAACACAGCGTTGAGGGATCGGAGAGGACTTTTCTATTTTGTACATACATTATTTTGTATATACCGTTTATGATGACTTCAGTGGTCACTGATGCTGCCAGGGGCAATCGGGACAGAGCCCCACCACAAACCACACACACCTCACAGCCACAGAAACAGATTCAGGCCACAGCAGAACAGATTCGGCTTGCCAAGATGATTGACAAAAAAGATGCGGATTTTGAGAAAAAAGTCCAACAGCTCATGGAGGTTACAGGCAAAAATCAAGATGAGTGTATGGTGTCCCTTCATGACTGCAATGGGGACGTCAACAGGGCTATTAACTTTCTGCTGGAGGAGGTCACTGTCAAGGACTCATGGGAGACTGTTGGTAAAAAGAAAAGTGTTGGAAAAGAAGGCATTGCACCAGAGGGTAGAGAGAAAAAAAGTGAAAGGGAAGGCAGAGGCCGTGGGGGTCCAAACAGACGTGGCAGAGGGGCCAGTCGCAACCAGGAAGGGCGGTCGGAAGAGAATGGCTTTGAATCGGCTCAAGTAGAGAGAGGAGGAGAGCGCGGGCGCAGAGGAAGGGGGAGAGGTGTTGGAGGCAGAGGAAGAGGCAGAGGAGCTGGAATAAGCAGGTCCTCTCAGGGAATCGGGACTTTCAACCCTGCTGACTACACAAGTTCTGCTGAGGCTGGAAATGAGACTACTGAAGGAGCAGGAGCCTGGAAAGACAATCTGGAAGACTGGGCTGCTGAAGACTGGAACGAAGATCTATCCGAGACCAAAGTGTTCACCGCTTCCTATGCTCTTAGCTCCAAAAACCACATGGAACCTGGCCAGGGTTTGGATCTCAGCTCTCTGTTGCCTAAGGTGACTGAGGGCAACTCTGAGCTGCTTGGGATGGAGCCGTCATGCCCTGATACTCTCACTCAGAGTCTGGTGTTCACCAACTCCCAGCAGCACAACagcagagcgcacacacacagctaCGCTTCTGCTGCTGCTGGCACTTATGCACATGCCGCATCGTCCATGGTGGGATCCAGGCTCCCTCAGAGTGATGTACAGAGAATTGAACCAATCATCACACCCCGAATCACCCCTTTGTCCAATCAGGTTTCAGTGCCCCTCAGCAGTGGTTCTGCATCTGTTGAATCCACTGCTTCATTGCCTCTCGAATCCACACCTACTGTGATTGAGCCCAAGGAGACCCCTGTTACAACAGCTCACCtGGACCTAAAGGCCCAACCTGACCCGTCCCCCATCCTGAGTCATCTGTCCCAGCATCAGAACGCTGCACTCCAGTCAGACCTGCCAACTCAGGCCCGAGATCCAGCCCCACTTCCTCCACATGATGGGACTACTCACACACTGAAACCCCTCTGTGAGCCTGTCTTCACGATGGCGGAGTTGTCACAACCCAGAAACATCAGACCACAGAAACGAAGAGTGCCCCCTCCATCTAAGATCCCCTCTTCTGCAGTAGAGATGCCAGGCTCTGCTGATGTGTCTGGGCTGAACGTGAAGTTCGGTGCGCTGGATTTTGAATCTGAATCTGCCGTGGAGAATCTCAACCAATCAGAAAGTCATCATCAAGAACCAGTGGCGGAGGCTCCAACTCAGTGCAGCCTATACACCAAACCAACTGCCATCAGTGAGTCTTTAGGTAGCTTGCCTCCAGCAGCAATGGAGCCCAGTTACCCCTCAGCATCTCTGGGTTTACCAAGCACTTCAGTCCCTCCTGCCTTGAGTCCATCTTCAACCAGCAGAGTGGAATCATCCAGCACCACCCCTCTAAGTAATGGATTCACTGAAATGAGGACATCCAGCACACAGGAAGCAGTTCCGTCAAGCACCCCTCAGACTGTATCCGCTGTTCTGCCCACCGAGAACGGGTTGCCGTCTTCATCGCTTACATCTTCCTCTTCATCCGCACCGCCTGCCCTCAGCGCACCCCTTCCATCACTTAGCAGTCATGTGAGCAGTGTTAACTCCCCTGCTGCTTCTGGACCCACCAGCTCTTCCCTAAATATTGGCACCGATGTGAATGTGAGCTTGTCAACATACTCTGGCTCTGTGTCAAGCGTGTCCAGCTCAGCGGTCATCTCGAATGGCCTGAGCACAGGAACCCAGAGCATCACCACTAATGGCCCTTCTGCTCCCTCTGCAGTTCGTTCTGCACCTCCTCAGACTAACATCACACCCTCCAACAACACTGGTAAAGCGCCTCCAAATTTGGCACAAGGAGTACCGCCACTGCTGCCCAGTCAGTACATCATGGGCCCTGGTGGCCTCCTCCCTGCTTATCCGCCAATCTATGGATATGAGGATCTACAGATGATGCAGTCACGATTGCCCATGGATTACTATGGCATGTTTCCTGGTACAGCACTAGCTGGCAGAGATGGAGGATTAGCAAGCAATCCCTACTCAGGTGAGCCTACCAAATTTGGCCGCAGTGACTCCAACTCCCCAGCCCCTGCCACCAGTCTCTCCACAGTGCCCCCCTCTCAGACTCAACAGAATGCTGTCCCCCCACAAAATCAAGGGCCGCAGAATCCAGGTCAAGCCCAGCAGGGTCAGACCCAGGCCTTCCTCAACCCACCTCTCCCTCCAGGTTATGGCTATACCAGCCTGCCCTACTACCCCGGGATGCCAGGAATGCCTAGTGCCTTCCAGTATGGCCCCACTGTTTTCATGCCCCAAACATCTACAAAGCAACACAACATGGGCCCATCCAGCCAATACCAGCACCAGGCTGGATACAGCCAGCACACATATGGACCAgGTTTTGATGAGCTGTCCCAGGCTCATGCTGGCGGAGAATATGGGAAAGTAGGATATGGAGGGAATTCCCTGTCACAGTCCAAAGTGGTCAACAATAATACAGGAAAAGCACCAGGACTGTCGGGATCTACGAGTTCAGAGCTCACTGGAACAGTATATAGCAAGAACCAGACTTTTGAAAAGCAGGGTTTCCCTACAGCAGCTGGCCCTGCATTTAGCCTGCCCTCCGCTCTGGGAGGAACCGGCCCCCTTAACCCTGCAGGAGCCCCTGGATACGCACCCGCACCCTTTCTTCATATCCTGCCCCATCAGCAGGCCCCCTCACAGTTACTGCACCACCACATGGGTCAAGACACACAGGGCCAACGCAGTCAGTCCAACAGCATGCAGAAGAGCCAGAGCAAGTCCAACTACAGCAGCTCTCCTTACTGGACTAACTGAATGCAGCGTTTATACTGTTAACGATGACAAAAGCCCAAATCTGTGTGTCCGCTCTGTCCTGCCTCTAACACGAGATGCTATATATACTCATACACTGTATCAGTTTCCCCACCCCCCTCCTCCAAAGTTCTCCTCTACTTCTCCATTTTCTTCCTTCTCTGAATTAGGTTGTTCATGTAAGATATTTATGTAagtatttatatatactgtaaatgttacaaaagaaaaaaaactgaacgtGGTCAATGCGGTCactccattttatttttttgaaggacttttgtttttgtttgttttaactgcAAAGATGTAGCAAAAAATAAAGGAAGCATTTTGAGAAACTTCAAAGGCATTGCAGTTAGAACTTAAGAGCACTGATGGTGGAGGAGGGTGAACTGTAGGCGTTTTATCTTTTCAGACATCTTGAGAGGCTTCACAAACATCAAGAGCGCACCACTCATGAGTGCTTTCCTCTAGGGATTGTTCTCCAGTATAATGGTTCTGAAATGTTGGTCCTTGAAGGAAAAAAACTGCccataaattttatattttactcttATTGCCATCTGAATAAAGGTTCTGAGCTATTCA
>TCONS_00070432
GTTGTATGAGGGGGAAACGCGTGCGGTCAGTGGGCAGGTAAAAACACAGCGTTGAGGGATCGGAGAGGACTTTTCTATTTTGTACATACATTATTTTGTATATACCGTTTATGATGACTTCAGTGGTCACTGATGCTGCCAGGGGCAATCGGGACAGAGCCCCACCACAAACCACACACACCTCACAGCCACAGAAACAGATTCAGGCCACAGCAGAACAGATTCGGCTTGCCAAGATGATTGACAAAAAAGATGCGGATTTTGAGAAAAAAGTCCAACAGgtaatgaaggacacaacTGGTGGATACTTCGCAGCCTCGAACGTCTCAAGATCTATTGGTCACT
>TCONS_00070433
GACTTTTCTATTTTGTACATACATTATTTTGTATATACCGTTTATGATGACTTCAGTGGTCACTGATGCTGCCAGGGGCAATCGGGACAGAGCCCCACCACAAACCACACACACCTCACAGCCACAGAAACAGATTCAGGCCACAGCAGAACAGATTCGGCTTGCCAAGATGATTGACAAAAAAGATGCGGATTTTGAGAAAAAAGTCCAACAGCTCATGGAGGTTACAGGCAAAAATCAAGATGAGTGTATGGTGTCCCTTCATGACTGCAATGGGGACGTCAACAGGGCTATTAACTTTCTGCTGGAGGAGGTCACTGTCAAGGACTCATGGGAGACTGTTGGTAAAAAGAAAAGTGTTGGAAAAGAAGGCATTGCACCAGAGGGTAGAGAGAAAAAAAGTGAAAGGGAAGGCAGAGGCCGTGGGGGTCCAAACAGACGTGGCAGAGGGGCCAGTCGCAACCAGGAAGGGCGGTCGGAAGAGAATGGCTTTGAATCGGCTCAAGTAGAGAGAGGAGGAGAGCGCGGGCGCAGAGGAAGGGGGAGAGGTGTTGGAGGCAGAGGAAGAGGCAGAGGAGCTGGAATAAGCAGGTCCTCTCAGGGAATCGGGACTTTCAACCCTGCTGACTACACAAGTTCTGCTGAGGCTGGAAATGAGACTACTGAAGGAGCAGGAGCCTGGAAAGACAATCTGGAAGACTGGGCTGCTGAAGACTGGAACGAAGATCTATCCGAGACCAAAGTGTTCACCGCTTCCTATGCTCTTAGCTCCAAAAACCACATGGAACCTGGCCAGGGTTTGGATCTCAGCTCTCTGTTGCCTAAGGTGACTGAGGGCAACTCTGAGCTGCTTGGGATGGAGCCGTCATGCCCTGATACTCTCACTCAGAGTCTGGTGTTCACCAACTCCCAGCAGCACAACagcagagcgcacacacacagctaCGCTTCTGCTGCTGCTGGCACTTATGCACATGCCGCATCGTCCATGGTGGGATCCAGGCTCCCTCAGAGTGATGTACAGAGAATTGAACCAATCATCACACCCCGAATCACCCCTTTGTCCAATCAGGTTTCAGTGCCCCTCAGCAGTGGTTCTGCATCTGTTGAATCCACTGCTTCATTGCCTCTCGAATCCACACCTACTGTGATTGAGCCCAAGGAGACCCCTGTTACAACAGCTCACCtGGACCTAAAGGCCCAACCTGACCCGTCCCCCATCCTGAGTCATCTGTCCCAGCATCAGAACGCTGCACTCCAGTCAGACCTGCCAACTCAGGCCCGAGATCCAGCCCCACTTCCTCCACATGATGGGACTACTCACACACTGAAACCCCTCTGTGAGCCTGTCTTCACGATGGCGGAGTTGTCACAACCCAGAAACATCAGACCACAGAAACGAAGAGTGCCCCCTCCATCTAAGATCCCCTCTTCTGCAGTAGAGATGCCAGGCTCTGCTGATGTGTCTGGGCTGAACGTGAAGTTCGGTGCGCTGGATTTTGAATCTGAATCTGCCGTGGAGAATCTCAACCAATCAGAAAGTCATCATCAAGAACCAGTGGCGGAGGCTCCAACTCAGTGCAGCCTATACACCAAACCAACTGCCATCAGTGAGTCTTTAGGTAGCTTGCCTCCAGCAGCAATGGAGCCCAGTTACCCCTCAGCATCTCTGGGTTTACCAAGCACTTCAGTCCCTCCTGCCTTGAGTCCATCTTCAACCAGCAGAGTGGAATCATCCAGCACCACCCCTCTAAGTAATGGATTCACTGAAATGAGGACATCCAGCACACAGGAAGCAGTTCCGTCAAGCACCCCTCAGACTGTATCCGCTGTTCTGCCCACCGAGAACGGGTTGCCGTCTTCATCGCTTACATCTTCCTCTTCATCCGCACCGCCTGCCCTCAGCGCACCCCTTCCATCACTTAGCAGTCATGTGAGCAGTGTTAACTCCCCTGCTGCTTCTGGACCCACCAGCTCTTCCCTAAATATTGGCACCGATGTGAATGTGAGCTTGTCAACATACTCTGGCTCTGTGTCAAGCGTGTCCAGCTCAGCGGTCATCTCGAATGGCCTGAGCACAGGAACCCAGAGCATCACCACTAATGGCCCTTCTGCTCCCTCTGCAGTTCGTTCTGCACCTCCTCAGACTAACATCACACCCTCCAACAACACTGGTAAAGCGCCTCCAAATTTGGCACAAGGAGTACCGCCACTGCTGCCCAGTCAGTACATCATGGGCCCTGGTGGCCTCCTCCCTGCTTATCCGCCAATCTATGGATATGAGGATCTACAGATGATGCAGTCACGATTGCCCATGGATTACTATGGCATGTTTCCTGGTACAGCACTAGCTGGCAGAGATGGAGGATTAGCAAGCAATCCCTACTCAGGTGAGCCTACCAAATTTGGCCGCAGTGACTCCAACTCCCCAGCCCCTGCCACCAGTCTCTCCACAGTGCCCCCCTCTCAGACTCAACAGAATGCTGTCCCCCCACAAAATCAAGGGCCGCAGAATCCAGGTCAAGCCCAGCAGGGTCAGACCCAGGCCTTCCTCAACCCACCTCTCCCTCCAGGTTATGGCTATACCAGCCTGCCCTACTACCCCGGGATGCCAGGAATGCCTAGTGCCTTCCAGTATGGCCCCACTGTTTTCATGCCCCAAACATCTACAAAGCAACACAACATGGGCCCATCCAGCCAATACCAGCACCAGGCTGGATACAGCCAGCACACATATGGACCAgGTTTTGATGAGCTGTCCCAGGCTCATGCTGGCGGAGAATATGGGAAAGTAGGATATGGAGGGAATTCCCTGTCACAGTCCAAAGTGGTCAACAATAATACAGGAAAAGCACCAGGACTGTCGGGATCTACGAGTTCAGAGCTCACTGGAACAGTATATAGCAAGAACCAGACTTTTGAAAAGCAGGGTTTCCCTACAGCAGCTGGCCCTGCATTTAGCCTGCCCTCCGCTCTGGGAGGAACCGGCCCCCTTAACCCTGCAGGAGCCCCTGGATACGCACCCGCACCCTTTCTTCATATCCTGCCCCATCAGCAGGCCCCCTCACAGTTACTGCACCACCACATGGGTCAAGACACACAGGGCCAACGCAGTCAGTCCAACAGCATGCAGAAGAGCCAGAGCAAGTCCAACTACAGCAGCTCTCCTTACTGGACTAACTGAATGCAGCGTTTATACTGTTAACGATGACAAAAGCCCAAATCTGTGTGTCCGCTCTGTCCTGCCTCTAACACGAGATGCTATATATACTCATACACTGTATCAGTTTCCCCACCCCCCTCCTCCAAAGTTCTCCTCTACTTCTCCATTTTCTTCCTTCTCTGAATTAGGTTGTTCATGTAAGATATTTATGTAagtatttatatatactgtaaatgttacaaaagaaaaaaaactgaacgtGGTCAATGCGGTCactccattttatttttttgaaggacttttgtttttgtttgttttaactgcAAAGATGTAGCAAAAAATAAAGGAAGCATTTTGAGAAACTTCAAAGGCATTGCAGTTAGAACTTAAGAGCACTGATGGTGGAGGAGGGTGAACTGTAGGCGTTTTATCTTTTCAGACATCTTGAGAGGCTTCACAAACATCAAGAGCGCACCACTCATGAGTGCTTTCCTCTAGGGATTGTTCTCCAGTATAATGGTTCTGAAATGTTGGTCCTTGAAGGAAAAAAACTGCccataaattttatattttactcttATTGCCATCTGAATAAAGGTTCTGAGCTATTC

Function

symbol description
ubap2b Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2 (ubiquitin associated protein 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-122 Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2 (ubiquitin associated protein 2).

Ensembl:

ensembl_id ENSDARG00000060065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070431 False 3853 mRNA 0.51 27 45293743 45328652
TCONS_00070432 False 345 mRNA 0.47 4 45293754 45297205
TCONS_00070433 True 3774 mRNA 0.51 26 45294767 45328651

Neighbor

gene id symbol gene type direction distance location
XLOC_035943 NA coding upstream 69467 45223476 ~ 45224276 (+)
XLOC_035942 si:ch211-220m6.4 coding upstream 101015 45186989 ~ 45192728 (+)
XLOC_035941 NA coding upstream 137576 45154888 ~ 45156167 (+)
XLOC_035940 si:ch211-163b2.4 coding upstream 283188 45003659 ~ 45010555 (+)
XLOC_035939 CRAT coding upstream 317288 44926629 ~ 44976455 (+)
XLOC_035945 pabpc1l coding downstream 5603 45334255 ~ 45352219 (+)
XLOC_035946 chmp4bb coding downstream 33083 45361735 ~ 45375108 (+)
XLOC_035947 tti2 coding downstream 52646 45381298 ~ 45395315 (+)
XLOC_035948 NA coding downstream 104620 45433272 ~ 45437216 (+)
XLOC_035949 NA coding downstream 110969 45439621 ~ 45440571 (+)
XLOC_035938 NA non-coding upstream 413342 44877975 ~ 44880401 (+)
XLOC_035936 NA non-coding upstream 546770 44744833 ~ 44746973 (+)
XLOC_035933 CR931937.1 non-coding upstream 633816 44659813 ~ 44659927 (+)
XLOC_035950 CU695141.2 non-coding downstream 115841 45444493 ~ 45445030 (+)
XLOC_035951 NA non-coding downstream 120218 45448870 ~ 45451410 (+)
XLOC_035952 NA non-coding downstream 140342 45468994 ~ 45472217 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_00861236_00886257 UBAP2B coding CI01000146 null 861236 ~ 886845 (+)