XLOC_035947 (tti2)


Basic Information

Item Value
gene id XLOC_035947
gene name tti2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45381298 ~ 45395315 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070442
AGAAACAACCCAGTTTCCGGGGAAACATTTTAAGGGGGACAGGTACATTAACTACAGCTATGCGGGAATTGAATATCAGAGACTCAACGGGTTTCTGCTCTATTCACGCTGCTTTGAGCCATATTCAGGAGCGCTTCGAGTCGGAGGACACTCATGATAAACGCGCGAGCATCCTGGAAGACACCATAGAGCTGCTAACGGGCGCTCCTCTCGACTGGCTCTTCCCTGAAGTGAACGCCGACTTGAGAGGCCAGTATTTAAGGCTAGTGAACTCGTTTACATGCTACGCTGCCCTGCCAGTGTGCGAGACAGACAGCGGCACTTTACCTGCCCAGAGTTACGAGAGCATACCTGTCAAATCTCAGGCGGTCAGTGCCGTGCTACTTGCGTTGTCTGCGCAGATTGAGAAGTTCCTTGTGAAGCAAAACGGTGCGTCAATAAAGTCTCTAGTTCGTACACTTGCCCCCTCACTCTATATATTCGCCGTTACACACCTGCATAAGCATCCTTGGACTGATGGACCCTCAAGAAAAAAAGCATCAGAACTCTTGACAGCACTTCTGAGAATGACAGGCAGCGGGTCAGTGCAGGAATTGCTGTCTGGAAAGCCTGATGTAGCCAAGAAAGGAGTTTTCGGTCCAGTTCTTCACACACTGCAGTCAGAATTAACTCAGAAGAACTGGAAGCGTAACCAGGCAGTGAAGCACGTGTTCTCCACTACCCTTGTGCAGGTTGAACAACCCTGGTTGACTGATTATTTGGAGAACGTGTTTCCTCCATCTCTGCTGATTTCTGATGATTATCACATAGAAAACAAAATATTAGGTGTGCACTGCCTGCATCACATTGTGCTCAACGTGCCTGCTGCTGATCTGAGGCAGTTTAATAGAGCCCAGGTGCTGTATCATACTCTGTTCAATCATTTATACACATC
>TCONS_00070443
CAGAGAAATACCTCAACATTTAAATGATTACTAAAAACAAGCTAAAGTTGCTACGacttagataaaaataaatgattgtgTTGCTGTTAATACATATATGCCATCTGTTTATTCTACAGGGGGACAGGTACATTAACTACAGCTATGCGGGAATTGAATATCAGAGACTCAACGGGTTTCTGCTCTATTCACGCTGCTTTGAGCCATATTCAGGAGCGCTTCGAGTCGGAGGACACTCATGATAAACGCGCGAGCATCCTGGAAGACACCATAGAGCTGCTAACGGGCGCTCCTCTCGACTGGCTCTTCCCTGAAGTGAACGCCGACTTGAGAGGCCAGTATTTAAGGCTAGTGAACTCGTTTACATGCTACGCTGCCCTGCCAGTGTGCGAGACAGACAGCGGCACTTTACCTGCCCAGAGTTACGAGAGCATACCTGTCAAATCTCAGGCGGTCAGTGCCGTGCTACTTGCGTTGTCTGCGCAGATTGAGAAGTTCCTTGTGAAGCAAAACGGTGCGTCAATAAAGTCTCTAGTTCGTACACTTGCCCCCTCACTCTATATATTCGCCGTTACACACCTGCATAAGCATCCTTGGACTGATGGACCCTCAAGAAAAAAAGCATCAGAACTCTTGACAGCACTTCTGAGAATGACAGGCAGCGGGTCAGTGCAGGAATTGCTGTCTGGAAAGCCTGATGTAGCCAAGAAAGGAGTTTTCGGTCCAGTTCTTCACACACTGCAGTCAGAATTAACTCAGAAGAACTGGAAGCGTAACCAGGCAGTGAAGCACGTGTTCTCCACTACCCTTGTGCAGGTTGAACAACCCTGGTTGACTGATTATTTGGAGAACGTGTTTCCTCCATCTCTGCTGATTTCTGATGATTATCACATAGAAAACAAAATATTAGGTGTGCACTGCCTGCATCACATTGTGCTCAACGTGCCTGCTGCTGATCTGAGGCAGTTTAATAGAGCCCAGGTGCTGTATCATACTCTGTTCAATCATTTATACACATCCGAGGCGGCGCTCGTACAGGTTGTGCTGCCCTGCCTTATAGACTTGCTACCCATTCTTGAGAAATCTTCAGCTCATGCAAGTTTTCCATGCATATCAAATCGCTTTGATGATCTGCTGTGCCACATTTTGACATACATGGAAATGGAGCACAAGCTAGACCTTCGTCAAGTGTATGCCAAAAATCTTGTCCTACTTATTGACAGGATGGGTATATCAGTCATACGTCACCTGAAGAGGTTGGAGAGGGTGATTGTGGGATACATGGAGGTCTCAGATGCTCCAGAGGAGAAAGCAAGACTGAGTATCCTTGATGCACTTCAAAAGACTTTACAGATTGCTTGGCCACGTATGGAGAAGAGGAGGGATTCACTAGCTCAGAGTCTTCTGAGGTTTCTGGTGGACGTCTCATCAGACTCGTCACCCACAGAGCTAAAAGAGCAGCTCATGACTAAAGCATCTCACTGTTTACTGCTGCTTGTGCACTGCTCAAAGGGGAAACTACAGGCTCTTCTCAGAGAGGTAGACAGCAGTTGTGTCCCTGACCCAGTCTTCAAGTGTATCCAAAATGTCCTTGCAGCATCTTGTCCGTAAGCTTTGACCATTTGCCACTTTTCCCCTCGATGTAGGTGAAGTTGGCTTGATAGAACGGGAATCTATTTACTCCATTTTATGAATGCAAGTACTAAACGAGGcagggttgttgttgttttttaaataaagtttataaacctgacttgtttttttttgtttaagttgCTTGAGATTCTTTCAATCAATTTAATAAGCATAAAACCTAAAATATGA

Function

symbol description
tti2 Predicted to be part of ASTRA complex. Predicted to be active in centrosome; cytosol; and nucleoplasm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TTI2 (TELO2 interacting protein 2).

GO:

id name namespace
GO:0005813 centrosome cellular_component
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0070209 ASTRA complex cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-110411-25 Predicted to be part of ASTRA complex. Predicted to be active in centrosome; cytosol; and nucleoplasm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TTI2 (TELO2 interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000073773

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070442 False 934 mRNA 0.48 4 45381298 45385376
TCONS_00070443 True 1824 mRNA 0.45 7 45381349 45395315

Neighbor

gene id symbol gene type direction distance location
XLOC_035946 chmp4bb coding upstream 6190 45361735 ~ 45375108 (+)
XLOC_035945 pabpc1l coding upstream 29079 45334255 ~ 45352219 (+)
XLOC_035944 ubap2b coding upstream 52646 45293743 ~ 45328652 (+)
XLOC_035943 NA coding upstream 157022 45223476 ~ 45224276 (+)
XLOC_035942 si:ch211-220m6.4 coding upstream 188570 45186989 ~ 45192728 (+)
XLOC_035948 NA coding downstream 37957 45433272 ~ 45437216 (+)
XLOC_035949 NA coding downstream 44306 45439621 ~ 45440571 (+)
XLOC_035950 CU695141.2 coding downstream 49178 45444493 ~ 45445030 (+)
XLOC_035951 NA coding downstream 53555 45448870 ~ 45451410 (+)
XLOC_035952 NA coding downstream 73679 45468994 ~ 45472217 (+)
XLOC_035941 NA non-coding upstream 225131 45154888 ~ 45156167 (+)
XLOC_035938 NA non-coding upstream 500897 44877975 ~ 44880401 (+)
XLOC_035936 NA non-coding upstream 634325 44744833 ~ 44746973 (+)
XLOC_035933 CR931937.1 non-coding upstream 721371 44659813 ~ 44659927 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_00259243_00272212 NA coding CI01000146 null 259078 ~ 273417 (-)