XLOC_035940 (si:ch211-163b2.4)


Basic Information

Item Value
gene id XLOC_035940
gene name si:ch211-163b2.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45003659 ~ 45010555 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070427
GCCATTTCAAATGCTGCAAGTGGAAGAAAGTTGGTACATGCTTGGGTTCCTGCTGAATGGTGGCCGACTGACCGTGGATCGGTGAGAGTTTTCGCTGTTAAAAAGTACCGTGAGCTTCACCAGAGGTCAAGACAATGCTTGTCAAAGCACAATAACGAAACCAGAAGAAGTTCATAAAAATCCCAGAGGcttgctttgatttatttttagcaGAGGTGAAAGAGAAGTTTTCATTACCACAGGATCTTGTAATTACAGTTACAGATGAAACTGGTACAGAGGTGGACGAAGATGTGTTTCCTGATCTAATGAGCACCAGTGGACTGCTTCTTGTTataaatgctttaaatgacaGTGGACCCTCCACACCTCAATCTTCAGCCAGCTTTGATACAGATACACTCTCTTTAACTTCAAAAAGCAGTGAGGACAGTGACTGGTTTAGTCCAAAACGCTTTAGAAAGGATGAGGATGAGGCTTCACAAAACTCACAGGCCAGAGATTTGATCAAACAAATTCTAGAGACAAGACCAGGTGGAGCAAATGTGCTGAGGGAGTATGAAGATACGGGGACAATTAATGATGAGACAAGAAAAGTTATGGTGAACATTCTAGTAGCCCACATGATGGAGACAGAAGgGAGAGTTCCACACCGCCTTACCAAACAGAAGTATGGTTTGGGAATTATCACCTTGTTTCCCTCACTCAGAGATCCCCAAGGGAGGACTGGATATGAACATTTTTATGATGGCCAGAAAAACTCTGGATTCTTGTCGTGGCGACTCAAAACCGTACAAAGGGGGACAAAACCTTCTGGAAATAAAGATGATCCTAAAACAGAGGAAAAGGGGGGTCCTTTGCTTGACCGACAGCTGTGTCACCCTGAAGATCAGCTGGACAGTGATCAAAGTCTAGAGGCCATCTCTCTGATGAATCATACAAGCGACCGTGAGGTCATCATGCAGAAGATGAGGGcaacatttaaatacagacaACGTCTTGTGCGTGATCCAGAGAAATCCACCACTATTCTCTCTGTTTTTCCTCGATTTCTGGATACGAAAGGATTGATTCTCCAGGACTTTACACTCCTGTTCGGGTCAGAAACGGCTTCCAGACTCTTGGAAAGGTGGCCAACAGTTTTCAAGTCAAAGATTATCAAGCTAGCAGAAACCTTGACATCCACTCCACTGCTGAAAAGATTGCTGTCATCTGCCAAACAGAACAAAGAAAGCAGCGAGGCAGAGGATTTCCCAGAGTGGGACAGTGACATATCATCCTTTCTTCTACTTCTGCATTTTTTGTCGCCCCAAGTTTCTGGAAGAAAGAAAATCCAGAAGATGAGCATCTCACAGGCAATTGACCATCTGGTGGTTTTTCAAAAGGCATGCCGGAGTATTCAGGAACACCTCGAGACAGAAGACAATCGTCAACCTTACATTCTTGCCATAGGAAGCAGCAAGGAAGCCATCAGTCAGTTCTTCATTGTGCTTGACAAAAAGCTCATCCCATGTCAAGAATCCTCTTCACTAGCGGCAATCGATGAACTGTTCAAGGTCCATTTTGTGTTCAGTATCAGTTATGATCCTCCACTTAAAGGTTTGTTCACATTTCTCCAGACCACAGTGTACAGAATTGATGTTGGCAGCACAAGTGAAACCCCAAGGGTGAAGGAGCTCAGAGCTAAATTACTGAATGATGTTTAGATGCTACATCTGTAAATCACTGTTTGCTACAACTGTAAAATTAATTCGGCACCTTAAACTTGTTCATAGTTTGTATCCTGGCAAGAAGTTTGAGTTGGTTTGTGCTCAGGATGGTTGCTTCCTACAATTCAAAAGTTATGCagggtttaaaaaacatttaaccaGATTTCATTTTAGGGGTGTGGCATCAAGCAGTGGTAACATATCTATTCAAAATCAGCATGCTCCAAATCCTGACGAAGCACTTGTGTCTGACACAGAGCAAATGACAGATAATGATGCTCAAGTGGTTGAATGTTCTTCTCTTTCAAGGGATAGTTCAAGGGAAATGTGTGCATCCATAATTGCCAAATTGCAGGCTAAtggtgttgcaaacaatttaattttGTCTGTTATTGAAAGCATGGAGGATTTTGTTAATGATTTCCATACTAACTTAAGGGAGAGCATTTTAAATGTTGTGCCTGTTGGTAGCACAACTAGAAGTTCAGTTGAAGaggtttttaataattttcataattcaTTCTCAGATTTTAATACAGACACTAAATGGAGAAAATATTTCAGCAAGAAATGGGGAGTTGTTGAACCCACTGAAATTCACTTGGGAGTCAGGTACGATTCAAGAAGAAATACGACCTCTGGAATGTATGAACAAACAACAGTTAATGACACCTTTATTTACATCCCTCTGCTCAAAACTCTGGAGTTCATTTTTAGAAATGAGGAAGTATGTAAACTGATTCAAGAACAAAGGCAAAGTGACATGTATAGAGAATTTTGTGATGGGCAGTATTACAAAAGGCATCCATTGTACTCCATCTGTAATAATGCACTTCAGATCCAAATTTACTATGATGATTTTGAAACAGCTAATCCATTAGGATCTAAACAAGGAATCCATAAACTTGGCTGTATATATTTTGTGCTTCGTAACCTACCATCACATGTAAATTCATCCTTGATGAACATACATCTAATTTCTTTATTTCATTCTGAAGATGGAAAAAAGTATGGCATGGACAAAATACTTGGCCCATTGATTGATGATGTTAAAGTTCTTGAGCAGAAGGGAATGAAGGTGTCTTTTTCTGAGGAGCCCATTTTTGGTACAATTGCTCAAATTACTGGCGATAACCTGGGTCTAAACGGTATTCTTGGTTATGTTGAATCTTTTTCTGCAAAACATTACTGCAGATTGTGCCTTACTGACAAGGTGTTAGCACAGGAAGTATTTAGCGAGGATGATCCAAGGGTGATTTTGCGCAACCGAAACCAAAATGAGAAGCATTACAAGTATCTTGCTGACAACCCTAATGAAAACTCCTGTTATGGTATTAAAAGAAATTCTATACTCAACACCTTGACTTACTTTAATGTATCTGAGAACTTTGTGCTGGACATTATGCATGATATTCTGGAGGGAGTGGCACAGTATGAAGTAAAACTGCTTTTTGAATATATGAGTTGCGGTCTAATACCTTGTGATTCCATTCCTCAAAGACTGTATGCCTTCAACTATGGTTTTTTGGACCGAAATAACCGCCCAACCAAGGTCAACCTTCAGCACCCAGGAAACAGTATTGGACTTAATGCAAGTCAGACATTGTGTCTCATCAGGAACATCCCTCTCATATTTGGAGATGTAGTTCCAGAGGGAGATAAGCACTGGCATTTGATGTTGCTGCTCTTGCAAATTGTTGACATTGTGTTTTCTCATTGCATTTCTGAAGGAATGATCATATTTTTGAAGCATCTGATAGTGGAGCACCATCGGTTGTTCAAAGACTTGTATCCTTCTAGAAATCTGATTCCGAAGCATCACCTTATGATTCACTACCCTGAATGCATCAGGCAAATTGGCCCATTGATTCATGTATGGACGATGAGGTACGAAGCAAAACACAggttttttaagaaaaatttaaaaaacttcaAAAACCTCACCAAATCGCTTGCAAAAAAACACCAGCTGGCAATAGCCTATTACTGGGAATCCTGAACATCGAGGGGTATTGAATCTGGTCCTGTTTCAAATGAGTTGTTGTCTGATCTTGAAAAGTGTGATTTTATTTCAGAGCAACTCAACATTGATCTCTCTAGTGAAGTAACTATCACTCCTTGGGTAAAGTGTCATGGTACGGAGTATCGAAAAAATCTTGTTGTTTGCTTAGATTTGGTTGAGGATGTACCAGTCTTTGGAAAGATTGTTCAAATTTTGATCAAGGATGGAGTTTATTTTTTGGTCTCATGTATGGAATCAGAGTTTGTTGAACATCTCCATGCTTTCAGGGTTTTTGCACAAGAGCACAGCCTTGTTCTcaaaaaaacagaacaattgTTTTACTACAAGCCATTTGATTTGCAAATGACATATGGCAATGACAGttcattttatattgttttggaCTGTTACTTGTAAAGTAATTTTATTGGTGGCTTGGTGTTCCATGTTGGAATAAAATTTTGAAAGAG
>TCONS_00070428
gtttatttctctCCACACCAAGAGCTTCACCAGAGGTCAAGACAATGCTTGTCAAAGCACAATAACGAAACCAGAAGAAGTTCATAAAAATCCCAGAGGcttgctttgatttatttttagcaGAGGTGAAAGAGAAGTTTTCATTACCACAGGATCTTGTAATTACAGTTACAGATGAAACTGGTACAGAGGTGGACGAAGATGTGTTTCCTGATCTAATGAGCACCAGTGGACTGCTTCTTGTTataaatgctttaaatgacaGTGGACCCTCCACACCTCAATCTTCAGCCAGCTTTGATACAGATACACTCTCTTTAACTTCAAAAAGCAGTGAGGACAGTGACTGGTTTAGTCCAAAACGCTTTAGAAAGGATGAGGATGAGGCTTCACAAAACTCACAGGCCAGAGATTTGATCAAACAAATTCTAGAGACAAGACCAGGTGGAGCAAATGTGCTGAGGGAGTATGAAGATACGGGGACAATTAATGATGAGACAAGAAAAGTTATGGTGAACATTCTAGTAGCCCACATGATGGAGACAGAAGgGAGAGTTCCACACCGCCTTACCAAACAGAAGTATGGTTTGGGAATTATCACCTTGTTTCCCTCACTCAGAGATCCCCAAGGGAGGACTGGATATGAACATTTTTATGATGGCCAGAAAAACTCTGGATTCTTGTCGTGGCGACTCAAAACCGTACAAAGGGGGACAAAACCTTCTGGAAATAAAGATGATCCTAAAACAGAGGAAAAGGGGGGTCCTTTGCTTGA
>TCONS_00070429
ATGAGCACCAGTGGACTGCTTCTTGTTataaatgctttaaatgacaGTGGACCCTCCACACCTCAATCTTCAGCCAGCTTTGATACAGATACACTCTCTTTAACTTCAAAAAGCAGTGAGGACAGTGACTGGTTTAGTCCAAAACGCTTTAGAAAGGATGAGGATGAGGCTTCACAAAACTCACAGGCCAGAGATTTGATCAAACAAATTCTAGAGACAAGACCAGGTGGAGCAAATGTGCTGAGGGAGTATGAAGATACGGGGACAATTAATGATGAGACAAGAAAAGTTATGGTGAACATTCTAGTAGCCCACATGATGGAGACAGAAGgGAGAGTTCCACACCGCCTTACCAAACAGAAGTATGGTTTGGGAATTATCACCTTGTTTCCCTCACTCAGAGATCCCCAAGGGAGGACTGGATATGAACATTTTTATGATGGCCAGAAAAACTCTGGATTCTTGTCGTGGCGACTCAAAACCGTACAAAGGGGGACAAAACCTTCTGGAAATAAAGATGATCCTAAAACAGAGGAAAAGGGGGGTCCTTTGCTTGACCGACAGCTGTGTCACCCTGAAGATCAGCTGGACAGTGATCAAAGTCTAGAGGCCATCTCTCTGATGAATCATACAAGCGACCGTGAGGTCATCATGCAGAAGATGAGGGcaacatttaaatacagacaACGTCTTGTGCGTGATCCAGAGAAATCCACCACTATTCTCTCTGTTTTTCCTCGATTTCTGGATACGAAAGGATTGATTCTCCAGGACTTTACACTCCTGTTCGGGTCAGAAACGGCTTCCAGACTCTTGGAAAGGTGGCCAACAGTTTTCAAGTCAAAGATTATCAAGCTAGCAGAAACCTTGACATCCACTCCACTGCTGAAAAGATTGCTGTCATCTGCCAAACAGAACAAAGAAAGCAGCGAGGCAGAGGATTTCCCAGAGTGGGACAGTGACATATCATCCTTTCTTCTACTTCTGCATTTTTTGTCGCCCCAAGTTTCTGGAAGAAAGAAAATCCAGAAGATGAGCATCTCACAGGCAATTGACCATCTGGTGGTTTTTCAAAAGGCATGCCGGAGTATTCAGGAACACCTCGAGACAGAAGACAATCGTCAACCTTACATTCTTGCCATAGGAAGCAGCAAGGAAGCCATCAGTCAGTTCTTCATTGTGCTTGACAAAAAGCTCATCCCATGTCAAGAATCCTCTTCACTAGCGGCAATCGATGAACTGTTCAAGGTCCATTTTGTGTTCAGTATCAGTTATGATCCTCCACTTAAAGGTTTGTTCACATTTCTCCAGACCACAGTGTACAGAATTGATGTTGGCAGCACAAGTGAAACCCCAAGGGTGAAGGAGCTCAGAGCTAAATTACTGAATGATGTTTAG

Function

symbol description
si:ch211-163b2.4 Predicted to enable microtubule binding activity. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-502 Predicted to enable microtubule binding activity. Predicted to be active in nucleus. Predicted to colocalize with cytoplasm.

Ensembl:

ensembl_id ENSDARG00000094890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070427 False 4181 mRNA 0.40 11 45003659 45010555
TCONS_00070428 False 775 mRNA 0.42 6 45004666 45006486
TCONS_00070429 True 1398 mRNA 0.44 8 45004997 45008080

Neighbor

gene id symbol gene type direction distance location
XLOC_035939 CRAT coding upstream 27204 44926629 ~ 44976455 (+)
XLOC_035938 NA coding upstream 123258 44877975 ~ 44880401 (+)
XLOC_035937 si:ch1073-459j12.1 coding upstream 202818 44759576 ~ 44800841 (+)
XLOC_035936 NA coding upstream 256686 44744833 ~ 44746973 (+)
XLOC_035935 elmod3 coding upstream 265305 44714336 ~ 44738354 (+)
XLOC_035941 NA coding downstream 144333 45154888 ~ 45156167 (+)
XLOC_035942 si:ch211-220m6.4 coding downstream 176434 45186989 ~ 45192728 (+)
XLOC_035943 NA coding downstream 212921 45223476 ~ 45224276 (+)
XLOC_035944 ubap2b coding downstream 283188 45293743 ~ 45328652 (+)
XLOC_035945 pabpc1l coding downstream 323700 45334255 ~ 45352219 (+)
XLOC_035933 CR931937.1 non-coding upstream 343732 44659813 ~ 44659927 (+)
XLOC_035925 NA non-coding upstream 695623 44275846 ~ 44308036 (+)
XLOC_035923 NA non-coding upstream 1632377 43366458 ~ 43371282 (+)
XLOC_035948 NA non-coding downstream 422717 45433272 ~ 45437216 (+)
XLOC_035949 NA non-coding downstream 429066 45439621 ~ 45440571 (+)
XLOC_035950 CU695141.2 non-coding downstream 433938 45444493 ~ 45445030 (+)

Expression


Co-expression Network