RNA id: TCONS_00072261


Basic Information

Item Value
RNA id TCONS_00072261
length 2141
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_035936
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 44744833 ~ 44746973 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgggtgtttcccattactgggttgtggctgggagggcatccgctgcataaaacacatgctggataagttggcgactcGTTCCGCTATGGTGACCTCTGATACATCAGAGcataagctggaaaaaaaaaacaaggcctATGTTTGTCTGTAAGACAGGACTTACctttaagcaggtcgcacaccagaagcgacgctcggcggcgcgccgcgcagcgccatgtattttagaattctaatcataggtttctatcaggatacacacaccggcgccgcaagtcgacggctgtcggcggcgcccggcgacggctcaggacgcagttcatttttcagccgcaccacagagcgccatctgattagtttcatgttaaatatcattcgaatgtgcgcgtctggtgtgcgatactttaatctgtcatgtacgcgccgtgtcgcggcgccgagcggcgcttctggtgtgcgacctgctttagccATGAACTGCTGATTATTTAAGTTGTATGTTATACATAAGCCAACTATTATTTCCTTAAAGGTTGCATGCAATGTTGAAATCTTCAGAAGCAAGAAGTGAGTCATGGCAGTGAAAAGACATCCATCAAACCTGTTTATTAGCTTAATCAAATGGTTCACTGAGGTAGAATCATTTATTTACTGTTGCGCCACATCAGGCAGAAAACACAGTAGCTGCTCATTTTATGCATTTCCTCTTTTAGCACAGATCCAATAAAGAAGGGTGGGATGCAACGGTAATAGAAAAAATTGACTTGGGAATTGTCTGTTGTGGAATAGAAAACTCCTATTGCAACGTAATTTTGCACTTGTCTTATTAGCATGTCAGGAAGTGCTAGCGATGTAGCGTCCCGTTGTTTTAACTCTTTGTTAGAGTTTGTTAATACAGTCTGTAAGATTgcatatgtttgtatatgttacCTAGTCTAAAGTGTTGTACGATACGAGTATGGTTTCAGGTTTCATTTATGCTCTTAttatattctttttcttttcttttcttttctttttgaaaGGATATACGAATATTAACACTCAGTGGATGTATATTAGACGTTCTGTCACTTTACCAGTCagttaaattttatataaagcaGAGTAGTATTTTATAAACTTTAAGAACAAAGCGTGATGGAGAAAGAATGTTCATATGCAGAGGCAAATCATcctttcctatttttttttttttttactggtttgACTCAAACAAGGGTCTTGCTTGTTCAAAGTTCATGAACAATCAAACTTCAAGTAAGAAATCAAGCAATCATCCCTAACCCTGATAATGATTTGAGTCTggtttgtttgtcttgtttttgtttgttttgatgaaAGGGTGGTCTGCTAcatattaatatgtaaatatagaGCAAAATTTCGATTGTAACAGGACATATTATGCATACCTCAGGCTTCAGACAGATATCTTCTGTATAGACAATTTATTGAAGACAGCCATGTTCCCGTGTTGTAGAACAAAATGGTTTTGTGTCTCTTACAGTAATCTACCTAGCTTGGGAATGTACAGTActgaatgcatttgtatgtgaACTAATGTAGCACTGCTATATATTTCTATAGGCCAAACTTGTGAATATTGTAGTCTTATATGCTGAAAAACAACCAAACTTTTGCTGGAGGATGTTTTTAACAATCAAAGCAGTTTGATGTTAAAACAAATCAGAGAATTTGTGGCCTTTGATATTTAATGTGCTTctgatagtatatatatatatatatataatttatttattttttccgcaATGTTACATAAAAGTGAAAAAACTTGAAAGAATCTTTGTTTGGACCAAAAGAAACGTTGGTGTATAGATTTTTATCAACAGATCTTACCGTGCCATTTTGATTTACCCCTTTTCCAGTGTGTTTAAAAGAAAGGATCCAATAAATCTATTAATCTACGCCCATGGAAAAAACggatttcttaaaaaaagacgAACACAATGTGCAAATTGATTCTGTGGGCTGCCCTGAATCGAATAAAACATCCTgcacttcatttaataaatgcattgttacTGTCTACATTCTTCAGAGCGTAATTAATTAAGAAAATATGTGTTAATACAGTGATGTATCGTATGAAGACAAATAAATGCAACTTAAACAACAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0008380 RNA splicing biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070418 lncRNA upstream 37346 44703854 ~ 44707487 (+) False XLOC_035934
TCONS_00070411 lncRNA upstream 265189 44478323 ~ 44479644 (+) True XLOC_035929
TCONS_00072260 lncRNA upstream 436797 44275846 ~ 44308036 (+) True XLOC_035925
TCONS_00072259 lncRNA upstream 1373551 43366458 ~ 43371282 (+) True XLOC_035923
TCONS_00071965 lncRNA upstream 1591926 43150197 ~ 43152907 (+) True XLOC_035921
TCONS_00072262 lncRNA downstream 131002 44877975 ~ 44880401 (+) False XLOC_035938
TCONS_00072263 lncRNA downstream 131007 44877980 ~ 44880401 (+) False XLOC_035938
TCONS_00072265 lncRNA downstream 131011 44877984 ~ 44880401 (+) False XLOC_035938
TCONS_00072264 lncRNA downstream 131011 44877984 ~ 44880401 (+) False XLOC_035938
TCONS_00072266 lncRNA downstream 131031 44878004 ~ 44880401 (+) True XLOC_035938
TCONS_00070420 mRNA upstream 6479 44714336 ~ 44738354 (+) False XLOC_035935
TCONS_00070421 mRNA upstream 6856 44722140 ~ 44737977 (+) True XLOC_035935
TCONS_00070419 mRNA upstream 36896 44703864 ~ 44707937 (+) True XLOC_035934
TCONS_00070414 mRNA upstream 49573 44623540 ~ 44695260 (+) False XLOC_035932
TCONS_00070417 mRNA upstream 54153 44677569 ~ 44690680 (+) True XLOC_035932
TCONS_00070422 mRNA downstream 12603 44759576 ~ 44800693 (+) False XLOC_035937
TCONS_00070423 mRNA downstream 36451 44783424 ~ 44800841 (+) True XLOC_035937
TCONS_00070425 mRNA downstream 179973 44926946 ~ 44976455 (+) False XLOC_035939
TCONS_00070427 mRNA downstream 256686 45003659 ~ 45010555 (+) False XLOC_035940
TCONS_00070428 mRNA downstream 257693 45004666 ~ 45006486 (+) False XLOC_035940
TCONS_00070415 other upstream 84906 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070398 other upstream 1706373 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070392 other upstream 1837009 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070387 other upstream 2021009 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070385 other upstream 2108820 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070426 other downstream 212314 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070440 other downstream 614762 45361735 ~ 45374450 (+) False XLOC_035946
TCONS_00070445 other downstream 861567 45608540 ~ 45610783 (+) True XLOC_035954
TCONS_00070452 other downstream 1311171 46058144 ~ 46064537 (+) True XLOC_035960
TCONS_00070463 other downstream 2019456 46766429 ~ 46766545 (+) True XLOC_035971

Expression Profile

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