Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00070419 |
| length | 1259 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 7 |
| gene id | XLOC_035934 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 44703854 ~ 44707937 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0050877 | nervous system process | biological_process |
| GO:0032367 | intracellular cholesterol transport | biological_process |
| GO:0008203 | cholesterol metabolic process | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0006694 | steroid biosynthetic process | biological_process |
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0030537 | larval behavior | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0050810 | regulation of steroid biosynthetic process | biological_process |
| GO:0008345 | larval locomotory behavior | biological_process |
| GO:0006869 | lipid transport | biological_process |
| GO:0150063 | visual system development | biological_process |
| GO:0005758 | mitochondrial intermembrane space | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0030424 | axon | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0015485 | cholesterol binding | molecular_function |
| GO:0120020 | cholesterol transfer activity | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0005212 | structural constituent of eye lens | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ko04913 | Ovarian steroidogenesis |
| ko04925 | Aldosterone synthesis and secretion |
| ko04927 | Cortisol synthesis and secretion |
| ko04979 | Cholesterol metabolism |
| ko04934 | Cushing syndrome |
| id | description |
|---|---|
| ZDB-GENE-001120-3 | Predicted to enable cholesterol binding activity. Acts upstream of or within oocyte maturation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Is expressed in endocrine system; forebrain; gonad; and interrenal primordium. Human ortholog(s) of this gene implicated in congenital adrenal hyperplasia. Orthologous to human STAR (steroidogenic acute regulatory protein). |
| ensembl_id | ENSDART00000016225 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00070411 | lncRNA | upstream | 224220 | 44478323 ~ 44479644 (+) | True | XLOC_035929 |
| TCONS_00072260 | lncRNA | upstream | 395828 | 44275846 ~ 44308036 (+) | True | XLOC_035925 |
| TCONS_00072259 | lncRNA | upstream | 1332582 | 43366458 ~ 43371282 (+) | True | XLOC_035923 |
| TCONS_00071965 | lncRNA | upstream | 1550957 | 43150197 ~ 43152907 (+) | True | XLOC_035921 |
| TCONS_00072258 | lncRNA | upstream | 1551932 | 43149745 ~ 43151932 (+) | False | XLOC_035921 |
| TCONS_00072261 | lncRNA | downstream | 36896 | 44744833 ~ 44746973 (+) | True | XLOC_035936 |
| TCONS_00072262 | lncRNA | downstream | 170038 | 44877975 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00072263 | lncRNA | downstream | 170043 | 44877980 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00072265 | lncRNA | downstream | 170047 | 44877984 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00072264 | lncRNA | downstream | 170047 | 44877984 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00070414 | mRNA | upstream | 8604 | 44623540 ~ 44695260 (+) | False | XLOC_035932 |
| TCONS_00070417 | mRNA | upstream | 13184 | 44677569 ~ 44690680 (+) | True | XLOC_035932 |
| TCONS_00070416 | mRNA | upstream | 13529 | 44673753 ~ 44690335 (+) | False | XLOC_035932 |
| TCONS_00070413 | mRNA | upstream | 85651 | 44613135 ~ 44618213 (+) | True | XLOC_035931 |
| TCONS_00070412 | mRNA | upstream | 142279 | 44549290 ~ 44561585 (+) | True | XLOC_035930 |
| TCONS_00070420 | mRNA | downstream | 6399 | 44714336 ~ 44738354 (+) | False | XLOC_035935 |
| TCONS_00070421 | mRNA | downstream | 14203 | 44722140 ~ 44737977 (+) | True | XLOC_035935 |
| TCONS_00070422 | mRNA | downstream | 51639 | 44759576 ~ 44800693 (+) | False | XLOC_035937 |
| TCONS_00070423 | mRNA | downstream | 75487 | 44783424 ~ 44800841 (+) | True | XLOC_035937 |
| TCONS_00070425 | mRNA | downstream | 219009 | 44926946 ~ 44976455 (+) | False | XLOC_035939 |
| TCONS_00070415 | other | upstream | 43937 | 44659813 ~ 44659927 (+) | True | XLOC_035933 |
| TCONS_00070398 | other | upstream | 1665404 | 43011613 ~ 43038460 (+) | False | XLOC_035918 |
| TCONS_00070392 | other | upstream | 1796040 | 42764234 ~ 42907824 (+) | False | XLOC_035916 |
| TCONS_00070387 | other | upstream | 1980040 | 42717004 ~ 42723824 (+) | False | XLOC_035915 |
| TCONS_00070385 | other | upstream | 2067851 | 42631632 ~ 42636013 (+) | True | XLOC_035914 |
| TCONS_00070426 | other | downstream | 251350 | 44959287 ~ 44968031 (+) | True | XLOC_035939 |
| TCONS_00070440 | other | downstream | 653798 | 45361735 ~ 45374450 (+) | False | XLOC_035946 |
| TCONS_00070445 | other | downstream | 900603 | 45608540 ~ 45610783 (+) | True | XLOC_035954 |
| TCONS_00070452 | other | downstream | 1350207 | 46058144 ~ 46064537 (+) | True | XLOC_035960 |
| TCONS_00070463 | other | downstream | 2058492 | 46766429 ~ 46766545 (+) | True | XLOC_035971 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000146_00670994_00674390.mRNA | True | 1850 | mRNA | 0.42 | 6 | CI01000146 | 670902 ~ 675398 (+) |
