RNA id: TCONS_00070387


Basic Information

Item Value
RNA id TCONS_00070387
length 775
RNA type processed_transcript
GC content 0.37
exon number 3
gene id XLOC_035915
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42712747 ~ 42724810 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCATTTTGTTCTCAAAAGAAGAGGGATGTCAACTGTGCTATAAATGTACCAGaaATTGGCAAAGGAGCTGTATTACAGAGCACATGATGACCGAGACCACTGATATTAATGTGCCAGAGGAGACCAGACAGAGCAAGGACTATCAGTCAGACTCATCAGACAGAAACTCTATCACTTCAGTCATTTCGTCAGACTCAGGATATGCTTCAAGAAAGAACACCGATTTAGAAGTCTCTGAAATAGAGGATgtggattttttaaataaaacctcCTAAAACTTTTCCAAAGACAATGTACCAACTTATAAACCCCTAAGAAACACTCATACACCTTCTCATTCACACAAGAATGTTGGGCAATTTAGTTGATCCAGTTCACTTAtaacatgtctttagactttgagggaaaccaaagcacccagctGAAACCCACACAGACACTGGGGGAACATTCAAACTCCTTCCTTTCacctgttaaacataaaagaagatacacTGAAGAAGGTTGGAAATGAATATGGAGATTTTATACTGCAGCTTTTGACAACTGTTATTGTGTCTCTTAGCTTAGTTGTCATTTTTAAAGCAAAGATTATtctgtttgagatgtctttgtcatgacaacttgacattaccacaaaaaaaacttgtcataaatctttcATAAACATGTTTGTCATGAGGCCTATATATTTTTCATAGGCATATATTTTTCTCATCATATTTGTTCAGTGGAACAGGCTGACAcctgagtttatttcttctgttaaaca

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-49 No description available

Ensembl:

ensembl_id ENSDART00000135224

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070383 lncRNA upstream 84303 42629882 ~ 42632701 (+) False XLOC_035914
TCONS_00072255 lncRNA upstream 657389 42052372 ~ 42059615 (+) False XLOC_035913
TCONS_00072256 lncRNA upstream 657389 42054590 ~ 42059615 (+) True XLOC_035913
TCONS_00071961 lncRNA upstream 911446 41794793 ~ 41805558 (+) True XLOC_035911
TCONS_00072254 lncRNA upstream 1142470 41570932 ~ 41574534 (+) False XLOC_035907
TCONS_00071963 lncRNA downstream 40410 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070393 lncRNA downstream 110169 42833993 ~ 42907824 (+) False XLOC_035916
TCONS_00070394 lncRNA downstream 168511 42892335 ~ 42907824 (+) True XLOC_035916
TCONS_00072257 lncRNA downstream 244156 42967980 ~ 42981293 (+) True XLOC_035917
TCONS_00071964 lncRNA downstream 425918 43149742 ~ 43154437 (+) False XLOC_035921
TCONS_00070382 mRNA upstream 80726 42629748 ~ 42636278 (+) False XLOC_035914
TCONS_00070384 mRNA upstream 80939 42629882 ~ 42636065 (+) False XLOC_035914
TCONS_00070380 mRNA upstream 1003701 41712799 ~ 41713303 (+) True XLOC_035910
TCONS_00070378 mRNA upstream 1066014 41647598 ~ 41650990 (+) True XLOC_035908
TCONS_00070376 mRNA upstream 1066085 41647539 ~ 41650919 (+) False XLOC_035908
TCONS_00070395 mRNA downstream 193691 42917515 ~ 42986689 (+) False XLOC_035917
TCONS_00070396 mRNA downstream 217731 42941555 ~ 42984970 (+) False XLOC_035917
TCONS_00070397 mRNA downstream 275120 42998944 ~ 43049069 (+) False XLOC_035918
TCONS_00070399 mRNA downstream 292890 43016714 ~ 43028353 (+) True XLOC_035918
TCONS_00070400 mRNA downstream 329695 43053519 ~ 43056975 (+) False XLOC_035919
TCONS_00070385 other upstream 80991 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070381 other upstream 728891 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070379 other upstream 1002238 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070370 other upstream 1381820 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070362 other upstream 1784166 40932722 ~ 40932838 (+) True XLOC_035897
TCONS_00070392 other downstream 40410 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070398 other downstream 287789 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070415 other downstream 1935989 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070426 other downstream 2235463 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070440 other downstream 2637911 45361735 ~ 45374450 (+) False XLOC_035946

Expression Profile

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