Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00070400 |
| length | 898 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 2 |
| gene id | XLOC_035919 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 43053519 ~ 43056975 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004784 | superoxide dismutase activity | molecular_function |
| GO:0005507 | copper ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041217-6 | Enables copper ion binding activity and superoxide dismutase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart; neuromast; pectoral fin; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in Creutzfeldt-Jakob disease; Gerstmann-Straussler-Scheinker syndrome; Huntington's disease-like 1; fatal familial insomnia; and kuru. Orthologous to human PRNP (prion protein). |
| ensembl_id | ENSDART00000147178 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072257 | lncRNA | upstream | 72226 | 42967980 ~ 42981293 (+) | True | XLOC_035917 |
| TCONS_00071963 | lncRNA | upstream | 145695 | 42764234 ~ 42907824 (+) | False | XLOC_035916 |
| TCONS_00070393 | lncRNA | upstream | 145695 | 42833993 ~ 42907824 (+) | False | XLOC_035916 |
| TCONS_00070394 | lncRNA | upstream | 145695 | 42892335 ~ 42907824 (+) | True | XLOC_035916 |
| TCONS_00071962 | lncRNA | upstream | 328709 | 42717005 ~ 42724810 (+) | False | XLOC_035915 |
| TCONS_00071964 | lncRNA | downstream | 92767 | 43149742 ~ 43154437 (+) | False | XLOC_035921 |
| TCONS_00072258 | lncRNA | downstream | 92770 | 43149745 ~ 43151932 (+) | False | XLOC_035921 |
| TCONS_00071965 | lncRNA | downstream | 93222 | 43150197 ~ 43152907 (+) | True | XLOC_035921 |
| TCONS_00072259 | lncRNA | downstream | 309483 | 43366458 ~ 43371282 (+) | True | XLOC_035923 |
| TCONS_00072260 | lncRNA | downstream | 1218871 | 44275846 ~ 44308036 (+) | True | XLOC_035925 |
| TCONS_00070397 | mRNA | upstream | 4450 | 42998944 ~ 43049069 (+) | False | XLOC_035918 |
| TCONS_00070399 | mRNA | upstream | 25166 | 43016714 ~ 43028353 (+) | True | XLOC_035918 |
| TCONS_00070395 | mRNA | upstream | 66830 | 42917515 ~ 42986689 (+) | False | XLOC_035917 |
| TCONS_00070396 | mRNA | upstream | 68549 | 42941555 ~ 42984970 (+) | False | XLOC_035917 |
| TCONS_00070390 | mRNA | upstream | 328709 | 42717005 ~ 42724810 (+) | False | XLOC_035915 |
| TCONS_00070402 | mRNA | downstream | 21069 | 43078044 ~ 43083693 (+) | True | XLOC_035920 |
| TCONS_00070403 | mRNA | downstream | 284020 | 43340995 ~ 43363590 (+) | True | XLOC_035922 |
| TCONS_00070404 | mRNA | downstream | 795768 | 43852743 ~ 43853846 (+) | True | XLOC_035924 |
| TCONS_00070405 | mRNA | downstream | 1301468 | 44358443 ~ 44380684 (+) | False | XLOC_035926 |
| TCONS_00070406 | mRNA | downstream | 1301468 | 44358443 ~ 44382240 (+) | True | XLOC_035926 |
| TCONS_00070398 | other | upstream | 15059 | 43011613 ~ 43038460 (+) | False | XLOC_035918 |
| TCONS_00070392 | other | upstream | 145695 | 42764234 ~ 42907824 (+) | False | XLOC_035916 |
| TCONS_00070387 | other | upstream | 329695 | 42717004 ~ 42723824 (+) | False | XLOC_035915 |
| TCONS_00070385 | other | upstream | 417506 | 42631632 ~ 42636013 (+) | True | XLOC_035914 |
| TCONS_00070381 | other | upstream | 1065406 | 41987350 ~ 41988113 (+) | True | XLOC_035912 |
| TCONS_00070415 | other | downstream | 1602838 | 44659813 ~ 44659927 (+) | True | XLOC_035933 |
| TCONS_00070426 | other | downstream | 1902312 | 44959287 ~ 44968031 (+) | True | XLOC_035939 |
| TCONS_00070440 | other | downstream | 2304760 | 45361735 ~ 45374450 (+) | False | XLOC_035946 |
| TCONS_00070445 | other | downstream | 2551565 | 45608540 ~ 45610783 (+) | True | XLOC_035954 |
| TCONS_00070452 | other | downstream | 3001169 | 46058144 ~ 46064537 (+) | True | XLOC_035960 |
