RNA id: TCONS_00071963


Basic Information

Item Value
RNA id TCONS_00071963
length 1310
lncRNA type inter_gene
GC content 0.47
exon number 9
gene id XLOC_035916
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42764234 ~ 42907824 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAGAAGCTGCTGCTCCTGGAGAGAGTGGAAGAAACGCGTTTCTCCTCAGCGCTTGAGGAGGATTCATCACGAGACACAATGCAGGAGGATGGCAAGGTGGTGGACGGCACTCTGCTGGGTGATGCCAATGGGGTGGAGCCTGGCAGAGGCCGACAGAAGGAAAGTGGCAAATGGCAGAGACCTCGCTTCACACGGAAAGCCCTCATGAGGTGCTGTCTGGTCAAATGGATCATCGCCAGCACTGGACCCAAGGAGCAAGtagACAGCAGTGACAGTGACCTTGAGCTGTCCACGGTGCGGCATCAGCCCGAGGGTCTGGAGCAGTTGCAGGCACAGACCAAATTCACCAAGAAGGAGCTGCAGTCCCTATATAGGGGCTTTAAAAATGAGTGCCCAAGTGGTTTGGTTGATGAGGAAACTTTCAAGACCATCTACTCCCAATTCTTTCCCCAAGGcgATGCCACCACATAcgcccattttctgtttaacgcatTTGATCTTGACAGAAATGGCTCGATCCGTTTTGAGGATTTTGTGATTGGTCTGTCCGTGTTGCTGAGAGGAACAGTCACTGAAAAGCTCAACTGGGCTTTCAACCTTTACGACATCAACAAGGATGGATACATCACTAAAGAGGAGATGCTGTTAATTATGAAGTCAATCTACGACATGATGGGAAGGTACACATACCCCAGTGTGCGAGACGAAGCTCCATCTGAACATGTGGAAAAGTTCTTTCAGaaaATGGACAGAAATCGAGACGGTGTGGTCACTATTGAAGAGTTTATTGAGACCTGTCAGAAAGATGAAAACATCATGAACTCCATGCAGCTCTTTGAAAATGTGATATAGCCCGAAAATGGATCACGGTAAAGCTGAAACAGCCGTCAACGTCCTAAAACCAGATCTCTCTATCTGTCTATATACCAAACTAGCACAGCAGTCACTCTCTGTTTTGTCCTGTAGCACTAATCCCATGCCTGCTGCACTCTGTAGAAAACTATAGACCAACACTTAGCCTGCAATATGGCGTCACAATTTATACTTCACAGCGGGACTACTagccaagcaaaaaaaaaaagaagaagagccAGGATGGCTGGGATCCTTCCAGTTGCTAAATACAAGCAACAAAACAATGAAACTTTTAAACCGAATGAACAAACCAAGTAGCAAAGCCACGTTTTGTATATCAGGTTGATGGATTCCCATGGAGTCGCCCACTTCCACATGAAAATCATCACCATTCTGGACTGCTGTCTTCTGCCTTATGAATGAGGGACATTACAAGACTCGATCTCAACCTTC

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009416 response to light stimulus biological_process
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0019842 vitamin binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0016830 carbon-carbon lyase activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071962 lncRNA upstream 39424 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070383 lncRNA upstream 131533 42629882 ~ 42632701 (+) False XLOC_035914
TCONS_00072255 lncRNA upstream 704619 42052372 ~ 42059615 (+) False XLOC_035913
TCONS_00072256 lncRNA upstream 704619 42054590 ~ 42059615 (+) True XLOC_035913
TCONS_00071961 lncRNA upstream 958676 41794793 ~ 41805558 (+) True XLOC_035911
TCONS_00072257 lncRNA downstream 60156 42967980 ~ 42981293 (+) True XLOC_035917
TCONS_00071964 lncRNA downstream 241918 43149742 ~ 43154437 (+) False XLOC_035921
TCONS_00072258 lncRNA downstream 241921 43149745 ~ 43151932 (+) False XLOC_035921
TCONS_00071965 lncRNA downstream 242373 43150197 ~ 43152907 (+) True XLOC_035921
TCONS_00072259 lncRNA downstream 458634 43366458 ~ 43371282 (+) True XLOC_035923
TCONS_00070390 mRNA upstream 39424 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070389 mRNA upstream 39424 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070388 mRNA upstream 39424 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070386 mRNA upstream 40548 42712747 ~ 42723686 (+) False XLOC_035915
TCONS_00070391 mRNA upstream 40746 42718135 ~ 42723488 (+) True XLOC_035915
TCONS_00070395 mRNA downstream 9691 42917515 ~ 42986689 (+) False XLOC_035917
TCONS_00070396 mRNA downstream 33731 42941555 ~ 42984970 (+) False XLOC_035917
TCONS_00070397 mRNA downstream 91120 42998944 ~ 43049069 (+) False XLOC_035918
TCONS_00070399 mRNA downstream 108890 43016714 ~ 43028353 (+) True XLOC_035918
TCONS_00070400 mRNA downstream 145695 43053519 ~ 43056975 (+) False XLOC_035919
TCONS_00070387 other upstream 40410 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070385 other upstream 128221 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070381 other upstream 776121 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070379 other upstream 1049468 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070370 other upstream 1429050 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070398 other downstream 103789 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070415 other downstream 1751989 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070426 other downstream 2051463 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070440 other downstream 2453911 45361735 ~ 45374450 (+) False XLOC_035946
TCONS_00070445 other downstream 2700716 45608540 ~ 45610783 (+) True XLOC_035954

Expression Profile

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