RNA id: TCONS_00070395


Basic Information

Item Value
RNA id TCONS_00070395
length 4114
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_035917
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 42917515 ~ 42986689 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTTTGACGTCAGAGTTTGTTTTGAGCATGCGTTGAAATAGCACAGTGCCCCGTGTACGTCCGTGTATTGCTATAtaaccaggaaaaaaaaatgttccacTCTCCTCTAGTTCATTATATGTAGACACAAGAACCTCCAACGCTGGAAGCTGTTTGATCTGAGAAAGctgctgtgagtgtgtgtatatttcCCCTCAGTAGTGTTGAAGTAGGGCACGCAGTACTGCAGCTGCCAGGTACCACGACGGAGACAACACAAGGGGAAATTACAGAAGAGGAcaacgttttttgtttttttctacccgGAAAGATGAGCTGGCTGGTCAATCAGTGGAGCATGAGATTGTGCTGACGGGCCGTTCGGCAGTGTTTCTACCTGAGCGCGAGTGGAGGAGAGCAGCAGATCCACAGTCAGTGGAGGACGAGCTCAGCGGAGGAATGGGTGTTGGGAAAAACACCACTTCCAAATCCATGGACTCCACCACAGAGCCTGGCAAATACGAGGAGGAGAACAAACACAGTGCACACTTCTATCCCATCCCTGTGGTTAACGGTGTCGTGCAGACCGCTGGAGATCAAGATGCTGAAGACACGCAGCTCATGGCTATTTATGCAAAAGACAGCCAGACGGAGGACAAGTGCTCCATATCAGACACTGTGGACAGTGCAGACAGCATCGACGCCGGGAGGATAGACATGATATACACAATAGAGGACACACCACCTTGGTATTTGTGTGTGTTCCTGGGTTTACAGCACTATCTCACCTGCTTCAGTGGAACTATTGCTGTGCCCTTTTTACTGGCTGAAGCGATGTGTGTGGGATTTGACCAATGGGCAACCAGTCAGCTGATCGGCACCATTTTCTTTTGTGTAGGCATCACCACTCTGCTACAGACCACCTTTGGCTGCCGGCTTCCGTTGTTCCAGGCCAGTGCGTTTGCTTTTCTCGCTCCAGCCAGAGCCATTCTTTCACTGGAGAAATGGAAGTGTAATGCAACAGCTACTCTGTTTTTAAATAGCACAGAGCTGCCGCACACAGAGGACATCTGGTACCCCAGGATACGAGAGATTCAAGGTGCAATAATAGTGTCGTCTCTAATCGAGGTGGTCATCGGGGCCTTGGGTTTGCCTGGCGTCCTGCTCAAATACATTGGGCCACTTACAATCACCCCTACCGTGACCCTGATCGGGTTGTCAGGCTTCCAGGCAGCTGGCGAGCGAGCAGGCAAACACTGGGGCATTGCCATGCTGACGATATTCCTGGTGTTGCTGTTTTCTCAGTACGCGCGGAACATCCACCTGCCGCTCCCCGTCTACAAATCCAAAAAAGGCTGGACGTCGTACCGCCTGCAGCTCTTCAAGATGTTCCCAATCATCATGGCTATCCTGGTGTCGTGGTTTCTTTGCTTCATCTTTACGGTGACTGATGTGTTTCCTCCTGAGAAGGACAAATACGGTTTCTATGCCAGAACAGACGCTCGACAGGGCATCCTGGCAGCCGCTCCGTGGTTTAAGATACCCTACCCCTTCCAATGGGGTCTGCCCACAGTGACCGCAGCAGGGGTGATTGGGATGCTGAGTGCCGTTGTTGCCAGTATTATTGAGTCCATCGGGGACTATTATGCCTGTGCCCGTCTCTCCGGTGCCCCTCCACCTCCTATACATGCTATTAACAgAGGGATCTTTACAGAGGGCCTTTCCTGTGTTCTTGATGGAGTCTTTGGCACTGGAAATGGCTCTACATCTTCCAGCCCAAACATCGGAGTGCTGGGCATCACAAAAGTGGGCAGCAGGAGGGTCATCCAGTATGGTGCAGCATTCATGCTACTGCTAGGAATGGTGGGTAAATTTAGCGCTCTGTTTGCATCGCTGCCGGACCCAGTCCTTGGAGCTTTATTCTGCACACTATTCGGCATGATCACCGCCGTCGGCCTCTCCAACCTGCAGTTTGTGGATCTCAACTCGTCCCGCAACCTGTTTGTCCTGGGATTCTCCATCTTCTTCGGCCTGGTTCTGCCTAGTTACCTTAAAGAAAACCCACTAGTCACTGGTATAGTGCAGATCGATCAAGTGCTGAATGTTCTTCTGACGACTGCCATGTTTGTTGGCGGTTCAGTGGCGTTTGTGTTGGATAATACTATTCCAGGCACTGCAGAGGAGAGGGGCATCCGTAAGATGAATCGTGGAAACAGCTCATCTAAACGGGAACGAATGGAATCCTACGACCTTCCGATTGGTATGGACTTCTTGCGGCGCCATCGCATTTTCCAGTACCTTCCAATCAGCCCAACTTTCGCCGGCTACCAGTGGAGCATCTTCACCCACAGCTGTCGAAACAGGAAAGACGAAAGCATGCCAGCCAAACCAGAACTGGGAGAAAGTGGAGTATAGTGTTAAACACCGCCCTATCCGGTAGGTTTTTAGACAGTCATCGCGAGGCTTCATTCCACCCAGTCAGTGAATTCTGCAGTCCTATCCTTAAATACACAACCAGCTTCAGACTCTTTCATCCTTTAAAAACTCTCCCTTTTGATCGACTTGTCATCAAACACTAAAGGCGGTTTCTTGAGCGGTTTTCAGGCGGATCTGAAATTGTCCCAATGACAACGGCGAGTGGAAGCAAGGCAGTTATACACGTTCGTCTCTTTATGTGGGAGGATGTGGCAACACAGACTGATTGATGGAAAACACTTTataaaatcctccgcatttctaGTATCAGTGTTCCTTTCTTTGGCCGACCTGCACTGCTCCGTCTGGTATGTCGATAATCAGATGCGTTTGACGATAAATGACATGCTAATGAGTTCCATTGTCACACATGCCCGTTCACAACAAGCCCACACTCGCTTTATGCATGGCACAGTTATGGAACAAAGTGGATCGCAAGGTTTACTTAGTGATGCAAGGTTATTGTGCTTTATGTTTGAATTGCACTGCTTGAATTAACGCACAAAATGTAGTTTGCTTGTTCGTGATTTTAACTTCCAGaagtttttatgattttaaagggttagttcaacaTGAAGTGAAAATTCTGTCGTTTACTCAGCTTTGTTTcgtttcagaacacaaattatgatattttttatgaaatatgaGATATTTTGCCTCTCGATTGTAACTGATCCAAGTTTCGATATTCAAAATCTTCAGaaatacaaactaaaattaatacATGATGGTCAGTTTAATCACAATTTTACGAATTGTTAGTAGTCTTTGTGTGAGggaaataaaaacagatattttGCCTCTAGATTGTATCTGATCGAAATTATAAAAATTCTAAATCTTAAGAAAGAcaacttaaaaataatacatattggccagttttattacaattttatcagTCAATAAAAGTATTTGtgtgtggggaaaaaaagaacGAAGAAAAATTAATTAGCGTTTTGAAAATAACCGAAATCTTGGGCGTTTCGAATGACATGAgagtaaataacagaattttctttCTGGGTGAACCAAGTCCCAATGCCTTAAAAAGATTGAGTCACTCAAGTTTATGTCGTTAGTTAGCTGCTATTTTGATAAATAGTTCTTGAAAAATGAGGGCGTTTCTTATCACCAGTAATAAATACTGTTTGTGCCACCTTGAATTGCTAGTTTCAGAGGCGGACGCAAGTCAAGGAAAGCTATGCAGTAGGTAAAATGACacgcacagaaaaaaaaaacacgaatgTATAATCAGTGCATGGTTTGCAAAAGAAGGAAGACTGGAAGGGAAAAACTTGAGAATGGTTGCACTCAGGTCTTGTTGAAAGACGGTGGGAAAAACGTTTTTTATAACTATATTGAGCTCGGTTCTGAgcgccacattttttttttttttggtctgtccTTTGTTTGATGTAGGTGACGCTTCCTCACCGCTGTTGATGTGAATGTGGTTTATATTGTAGATCCCACAAGCACTGCTGATGTGGTTTGTTTGTGAGGAAGAGCAGAGTTTAGTGGGCATTTATATAGAGGGCGGCAATCTGAACATCAAACCTGGAAGACTTATGCACTGCTGGTTACCTAAAGATGTCCTGTGGGTTTTAATAATGGGGATTTTTAAGTTCATGAGTGAAATAAATTCTGTTAAACATT

Function

GO:

id name namespace
GO:0019852 L-ascorbic acid metabolic process biological_process
GO:0015882 L-ascorbic acid transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-090521-3 Predicted to enable transmembrane transporter activity. Predicted to be involved in L-ascorbic acid metabolic process. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A2 (solute carrier family 23 member 2).

Ensembl:

ensembl_id ENSDART00000021715

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071963 lncRNA upstream 9691 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070393 lncRNA upstream 9691 42833993 ~ 42907824 (+) False XLOC_035916
TCONS_00070394 lncRNA upstream 9691 42892335 ~ 42907824 (+) True XLOC_035916
TCONS_00071962 lncRNA upstream 192705 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070383 lncRNA upstream 284814 42629882 ~ 42632701 (+) False XLOC_035914
TCONS_00071964 lncRNA downstream 163053 43149742 ~ 43154437 (+) False XLOC_035921
TCONS_00072258 lncRNA downstream 163056 43149745 ~ 43151932 (+) False XLOC_035921
TCONS_00071965 lncRNA downstream 163508 43150197 ~ 43152907 (+) True XLOC_035921
TCONS_00072259 lncRNA downstream 379769 43366458 ~ 43371282 (+) True XLOC_035923
TCONS_00072260 lncRNA downstream 1289157 44275846 ~ 44308036 (+) True XLOC_035925
TCONS_00070390 mRNA upstream 192705 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070389 mRNA upstream 192705 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070388 mRNA upstream 192705 42717005 ~ 42724810 (+) False XLOC_035915
TCONS_00070386 mRNA upstream 193829 42712747 ~ 42723686 (+) False XLOC_035915
TCONS_00070391 mRNA upstream 194027 42718135 ~ 42723488 (+) True XLOC_035915
TCONS_00070397 mRNA downstream 12255 42998944 ~ 43049069 (+) False XLOC_035918
TCONS_00070399 mRNA downstream 30025 43016714 ~ 43028353 (+) True XLOC_035918
TCONS_00070400 mRNA downstream 66830 43053519 ~ 43056975 (+) False XLOC_035919
TCONS_00070401 mRNA downstream 69464 43056153 ~ 43056726 (+) True XLOC_035919
TCONS_00070402 mRNA downstream 91355 43078044 ~ 43083693 (+) True XLOC_035920
TCONS_00070392 other upstream 9691 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070387 other upstream 193691 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070385 other upstream 281502 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070381 other upstream 929402 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070379 other upstream 1202749 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070398 other downstream 24924 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070415 other downstream 1673124 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070426 other downstream 1972598 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070440 other downstream 2375046 45361735 ~ 45374450 (+) False XLOC_035946
TCONS_00070445 other downstream 2621851 45608540 ~ 45610783 (+) True XLOC_035954

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_04450920_04470110.mRNA True 1900 mRNA 0.51 13 CI01000053 4450844 ~ 4470110 (-)