Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00070409 |
| length | 699 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_035929 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 44475793 ~ 44480456 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0019882 | antigen processing and presentation | biological_process |
| GO:0042613 | MHC class II protein complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-081105-52 | Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within adaptive immune response and antigen processing and presentation of peptide or polysaccharide antigen via MHC class II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); gastrointestinal system cancer (multiple); hematologic cancer (multiple); and systemic scleroderma (multiple). Orthologous to several human genes including HLA-DOA (major histocompatibility complex, class II, DO alpha); HLA-DPA1 (major histocompatibility complex, class II, DP alpha 1); and HLA-DQA1 (major histocompatibility complex, class II, DQ alpha 1). |
| ensembl_id | ENSDART00000190118 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072260 | lncRNA | upstream | 167757 | 44275846 ~ 44308036 (+) | True | XLOC_035925 |
| TCONS_00072259 | lncRNA | upstream | 1104511 | 43366458 ~ 43371282 (+) | True | XLOC_035923 |
| TCONS_00071964 | lncRNA | upstream | 1321356 | 43149742 ~ 43154437 (+) | False | XLOC_035921 |
| TCONS_00070418 | lncRNA | downstream | 223848 | 44703854 ~ 44707487 (+) | False | XLOC_035934 |
| TCONS_00072261 | lncRNA | downstream | 264827 | 44744833 ~ 44746973 (+) | True | XLOC_035936 |
| TCONS_00072262 | lncRNA | downstream | 397969 | 44877975 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00072263 | lncRNA | downstream | 397974 | 44877980 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00072265 | lncRNA | downstream | 397978 | 44877984 ~ 44880401 (+) | False | XLOC_035938 |
| TCONS_00070408 | mRNA | upstream | 27370 | 44442220 ~ 44448423 (+) | True | XLOC_035928 |
| TCONS_00070407 | mRNA | upstream | 54375 | 44420108 ~ 44421418 (+) | True | XLOC_035927 |
| TCONS_00070406 | mRNA | upstream | 93553 | 44358443 ~ 44382240 (+) | True | XLOC_035926 |
| TCONS_00070405 | mRNA | upstream | 95109 | 44358443 ~ 44380684 (+) | False | XLOC_035926 |
| TCONS_00070404 | mRNA | upstream | 621947 | 43852743 ~ 43853846 (+) | True | XLOC_035924 |
| TCONS_00070412 | mRNA | downstream | 69284 | 44549290 ~ 44561585 (+) | True | XLOC_035930 |
| TCONS_00070413 | mRNA | downstream | 133129 | 44613135 ~ 44618213 (+) | True | XLOC_035931 |
| TCONS_00070414 | mRNA | downstream | 143534 | 44623540 ~ 44695260 (+) | False | XLOC_035932 |
| TCONS_00070416 | mRNA | downstream | 193747 | 44673753 ~ 44690335 (+) | False | XLOC_035932 |
| TCONS_00070417 | mRNA | downstream | 197563 | 44677569 ~ 44690680 (+) | True | XLOC_035932 |
| TCONS_00070398 | other | upstream | 1437333 | 43011613 ~ 43038460 (+) | False | XLOC_035918 |
| TCONS_00070392 | other | upstream | 1567969 | 42764234 ~ 42907824 (+) | False | XLOC_035916 |
| TCONS_00070387 | other | upstream | 1751969 | 42717004 ~ 42723824 (+) | False | XLOC_035915 |
| TCONS_00070385 | other | upstream | 1839780 | 42631632 ~ 42636013 (+) | True | XLOC_035914 |
| TCONS_00070381 | other | upstream | 2487680 | 41987350 ~ 41988113 (+) | True | XLOC_035912 |
| TCONS_00070415 | other | downstream | 179807 | 44659813 ~ 44659927 (+) | True | XLOC_035933 |
| TCONS_00070426 | other | downstream | 479281 | 44959287 ~ 44968031 (+) | True | XLOC_035939 |
| TCONS_00070440 | other | downstream | 881729 | 45361735 ~ 45374450 (+) | False | XLOC_035946 |
| TCONS_00070445 | other | downstream | 1128534 | 45608540 ~ 45610783 (+) | True | XLOC_035954 |
| TCONS_00070452 | other | downstream | 1578138 | 46058144 ~ 46064537 (+) | True | XLOC_035960 |
