XLOC_035906 (si:ch211-158d24.2)


Basic Information

Item Value
gene id XLOC_035906
gene name si:ch211-158d24.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 41533268 ~ 41610205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070374
TTCAGAGCCATTGAGGAAAAAAGGGGGTCTCTCTCGGATATGGTGGAGTAGGCTACATCGGGGCGGCTTGGAAACCACCTGGTTTGGAATAACCCGATGGAAATTGGAGGACGGGGGCCTTGCGAAGTCCGTCTCGAGGAGGTTTTCATGGAGCGTTGAGATTATTATTATGTGGTGGCTTGCCTTAATGATGTTTACATCTCCGGCTTTCCCATTCatcgtgtttgtgtgcatggggTTAACCGAGGCGGCTCATTCCTACGATGCGCTGCCGTTAGTAATAAGGAAATCTCGTGCAGTCGCCGAAGAGCATCCAGAAACGAACGCGGACGGGTTTTCAGGGCACCGGCTCGGCATTGTCGCATTAACACCAGCGCCCACGATCACGTCCGCCAGAAACCCGATAAATGTCGCCGCACCAGCAGCCACCATTAAACCAGCAACAACGGACCCCGCCACCCCATCCCCGTATAATCCCAGCTACATGGCTGCGTTTGCTCGGAGGAAGCTCAGCTCTTTGGAAACCCAGATGAAAGTCGCGCTGATGTCTGATAATAGAGCGGATAGATCAGCCGCCGTGCCCGATTTCAGCACAACCTCGGACAATTCTCAAGAGCTGGTGTGTAACTGCAGTGGTGAAGGAGTGTCAGACCCTGACGAGTGTGACCGTAAGACGGGTCAGTGTGACTGTATGCCGGGTTACACGGGCCTGCAGTGTGAAGAGTGCGAGGAAGATCACTTTACCAACGGCACCATCGGCTGCCTGCCCTGCGCATGCGACTCCTTCGGGGCCCATGGCACCAGCTGTGACAGTTCAGGTATGTGTACGTGCAAGATGGGTGTCTATGGGCCCAAGTGTGATGACTGCCACCCTGGATTCTTTCACTTCAGCAGCACAGGATGCCAACCGTGCCAATGCAACAACCACTCTACCTACTGCCATCCTCAGTCAGGTATCTGTTTGGACTGTCAGGACAACACTCAGGGTCACAACTGTGAGGAGTGTCTGCCCAGTTTTTATCGGCGTGGTGGCGAAGGGTCAGCGGACGTCTGTCTGCCGTGTCCATGCTCCTCTGAGACCTCCAGCGGCATCTGCCATCTTGATTCCAGTGGACGCCCTGTATGTGCTGAATGTAAGCCTGGATTCACTGGCCCGACATGTGACTCCTGCACGGATGGTTTGTTTAAATCGGCAGGGACGTGCATCCCCTGTGACTGTAATGGGAACGCGGACCCTCGCTCCGTGCCACAAATATGCCACCCTGAGACGGGCCACTGCCACCGCTGCGTCAACCACACAACGGGAGCTCACTGTGAGATCTGTGCTCGTGGATACACGGGGGACGCCCGACGTCACAACTGCACCCTGAGAGctGTGAAAGTCCTCCCGACAACTTCAGTTTCTTCTACACCTTCTTCCCGCCTCCTCACTTCCTCATCACCCACGACCAACCCAAGCCTCCCGACTCTTCAGTCAGGCACAGGAGACTCCGCAGGACACAACAGCACTGCCTCGGCTCTGACAGTGGTCTCCTGGACGCAATTCAACATCATTATCCTCGCCGTCATCATCGTGGTCGTGGTTCTCCTCATGGGATTTGTCGGAGGGGTGTACACGTACCGTGAGTACCGCAATCGGAAACTCAATGCCCCGTTTTGGACCATTGAGCTCAAGGAGGACAACATCAGTTTTAGCAGCTACCACGACAGCATCCCGCATGCCGATCCAAATGGGCTATTGGAGGAGGAACCGTGTGTGGTTGCGGCTAACGGGCAGTTAGCGCTCGCTACTGCCGCCAACATGTATAAAGCATGA

Function

symbol description
si:ch211-158d24.2 Predicted to be involved in several processes, including animal organ morphogenesis; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane.

GO:

id name namespace
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0016477 cell migration biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0005604 basement membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-115 Predicted to be involved in several processes, including animal organ morphogenesis; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane.

Ensembl:

ensembl_id ENSDARG00000078536

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070374 True 1816 mRNA 0.55 6 41533268 41610205

Neighbor

gene id symbol gene type direction distance location
XLOC_035905 BX005462.2 coding upstream 13987 41505590 ~ 41519281 (+)
XLOC_035904 NA coding upstream 70536 41453618 ~ 41462732 (+)
XLOC_035903 si:ch211-152p23.2 coding upstream 92579 41413919 ~ 41440689 (+)
XLOC_035901 olfml2a coding upstream 190350 41281801 ~ 41342918 (+)
XLOC_035902 CR382384.1 coding upstream 198084 41335070 ~ 41335184 (+)
XLOC_035908 si:ch211-158d24.4 coding downstream 37334 41647539 ~ 41650990 (+)
XLOC_035909 CU326364.1 coding downstream 100154 41710359 ~ 41714766 (+)
XLOC_035910 si:ch211-208g1.1 coding downstream 102594 41712799 ~ 41713303 (+)
XLOC_035911 NA coding downstream 184588 41794793 ~ 41805558 (+)
XLOC_035912 BX469918.1 coding downstream 377145 41987350 ~ 41988113 (+)
XLOC_035898 NA non-coding upstream 566480 40966528 ~ 40966788 (+)
XLOC_035897 AL935142.1 non-coding upstream 600430 40932722 ~ 40932838 (+)
XLOC_035913 NA non-coding downstream 442167 42052372 ~ 42059615 (+)
XLOC_035916 NA non-coding downstream 1154029 42764234 ~ 42907824 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_06182140_06229627 NA coding CI01000053 null 6182140 ~ 6230029 (+)