Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU258757 |
| length | 3971 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G228012 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 4745741 ~ 4750012 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU258784 | lncRNA | downstream | 32488 | 4712907 ~ 4713253 (-) | True | G228037 |
| TU258715 | lncRNA | downstream | 87631 | 4656086 ~ 4658110 (-) | False | G227980 |
| TU258716 | lncRNA | downstream | 87631 | 4656086 ~ 4658110 (-) | False | G227980 |
| TU258717 | lncRNA | downstream | 87631 | 4656086 ~ 4658110 (-) | False | G227980 |
| TU258718 | lncRNA | downstream | 87631 | 4656086 ~ 4658110 (-) | True | G227980 |
| TU258808 | lncRNA | upstream | 26938 | 4776950 ~ 4777226 (-) | True | G228060 |
| TU258809 | lncRNA | upstream | 29559 | 4779571 ~ 4779782 (-) | True | G228061 |
| TU258810 | lncRNA | upstream | 30115 | 4780127 ~ 4780396 (-) | True | G228062 |
| TU258855 | lncRNA | upstream | 106136 | 4856148 ~ 4856575 (-) | True | G228104 |
| TU258842 | lncRNA | upstream | 136764 | 4886776 ~ 4889254 (-) | True | G228092 |
| CI01000053_04703670_04706744.mRNA | mRNA | downstream | 38732 | 4703535 ~ 4707009 (-) | True | CI01000053_04703670_04706744 |
| CI01000053_04642167_04642450.mRNA | mRNA | downstream | 102576 | 4641841 ~ 4643165 (-) | True | CI01000053_04642167_04642450 |
| CI01000053_04514278_04540909.mRNA | mRNA | downstream | 204832 | 4513565 ~ 4540909 (-) | True | CI01000053_04514278_04540909 |
| CI01000053_04494346_04508379.mRNA | mRNA | downstream | 237101 | 4494322 ~ 4508640 (-) | True | CI01000053_04494346_04508379 |
| CI01000053_04450920_04470110.mRNA | mRNA | downstream | 275631 | 4450844 ~ 4470110 (-) | True | CI01000053_04450920_04470110 |
| CI01000053_04834397_04836861.mRNA | mRNA | upstream | 84054 | 4834066 ~ 4837227 (-) | True | CI01000053_04834397_04836861 |
| CI01000053_05102710_05104285.mRNA | mRNA | upstream | 350585 | 5100597 ~ 5104490 (-) | False | CI01000053_05102710_05104285 |
| CI01000053_05221746_05223262.mRNA | mRNA | upstream | 470738 | 5220750 ~ 5223262 (-) | True | CI01000053_05221746_05223262 |
| CI01000053_05302453_05304313.mRNA | mRNA | upstream | 552187 | 5302199 ~ 5304313 (-) | True | CI01000053_05302453_05304313 |
| CI01000053_05308075_05312795.mRNA | mRNA | upstream | 556222 | 5306234 ~ 5312795 (-) | True | CI01000053_05308075_05312795 |
| TU258305 | other | downstream | 658001 | 4087237 ~ 4087740 (-) | True | G227604 |
| TU257616 | other | downstream | 1192770 | 3552883 ~ 3552971 (-) | True | G227041 |
| TU257615 | other | downstream | 1193763 | 3550333 ~ 3551978 (-) | False | CI01000053_03551506_03551965 |
| TU257617 | other | downstream | 1193763 | 3550659 ~ 3551978 (-) | True | CI01000053_03551506_03551965 |
| TU257528 | other | downstream | 1748473 | 2996717 ~ 2997268 (-) | True | G226963 |
| TU259481 | other | upstream | 1034471 | 5784483 ~ 5787690 (-) | True | G228651 |
| TU259584 | other | upstream | 1181580 | 5931592 ~ 5932241 (-) | True | G228750 |
