RNA id: TU258718


Basic Information

Item Value
RNA id TU258718
length 1857
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G227980
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 4656086 ~ 4658110 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGAGACGCTATTGGTCACGCGAGAACGGAGTTTTTAGTTCCTCCAAGCCTTTTTGGTGGTTTTAAGTACGAACATGGCAACTCCCATATTTAGTCAGGTAAGGTAAACTGCAGTAATTTACTTTACAAAGGCAAAACACACATTTTGCATCTTATCAAAAATGTACGCTTGATGTAGTAATGATAACTAGTTGTATTATATTGACCAATACCTCTATTAACGTGTCATATACATATTTCTATAACTTAGTACTTCTTGATGTACTTCTTTACAAGAGCATACTTTGAGAAACAGATTTGCACGGAAATGTGGAAATGATATTTTTGTTCTAAATGCGTCCTCAGTTTTGAAGACTTGTGTATATACTTGTATATTTGTGTAGTGGTTTGTACACTAATAAAAGTAGATAAATGGCACGTTTTTGCATACCATCACCTGATAAGTATGTAACAATGGGATTTCACTGCATTGCAGTTTGGTGTCGCCACACTGACCTCCTCAGGTTGGAATGCAGCCTCTCAACATTAGCTGTTGTCTATAATCAGCTCAACCACTGATAATCACACGAGTAATCAGCCACAACTTGGTTATATAATATGCATCCTGTAGGTCTAATACATATATAAATACAATAAACAACATGCTTCACACACATACTGTAGCCTACCTTTAAATTAAAATATGCTTCATACAGTGGATGTGTCTCTTTTTCTAATGTCTTATATCTGTATATTAATTTGTAATTTGTTCTGTTTTGTAGATGTATCTGCTGTGGAAGTTACAGAAGGTCTCGTCAATAGGTGTTTATCAAATTGTATGTTGTGAATGCTGGTGTTTCCTGCAGCCAGCAGAGGGGGCAGTTGCACTTTAAGTAAAACAAGCTTTACATTCAGAGGGAAGTAAACTTAATAGAGAGCTTTTGATTTAGCATTTAATTATTTTAATAACATGACTGTATTCGGAAATTATTTTAAAGTCTTTTCTTACCAATGATGTTTTAGAGAAAACTGGAGCTCATTGATCTCTTAAGTCACACCAAGATTTCAAAGCTATGAAATGTGTAAAAGCATCACTGGTCCCAGCACAACATCCCGAATGACTAAAAAAGATCTCGGGATCACCATGGATTTTGGAAGTACTGCTTTAAAAATGTTGCATAAAATGAAATCACAAAAAGTGGATGAAAACAAAAGTCGTAACCCTCCGGACATTGAGCAAGCCAGTCAGGCCACAGAGCTGGAGAATATGGAGATGACAGAAGAAAAGCATGGGAAAACACTGAGACAGCATCATTAGGTGAAGAGATCGTGCCAATGACAGTATCAAAAGCAAGTCTCAAACCTTACCATCTCATTTCTGACAGAAAACATAAATACAGAGTAGGGTGGGATTGTCACGAATGTGGCTCCCTCGCCTCCTCCTCCGCACCACCGGAGGGAGCCATCACCTGAATACTGACTGTTTCCCATTCGGACTACGTTTCCCATAGGCCCTCATTCCTGGGACTGATTGCGCACACACCTGCACCTCATCACACTCACACTATTTAAGCCACACACTCACACATACACACCGCGAAGTCTTGATTTGCCCTGGTGATCATTACTGAGCGTTTTCTTGTGGACTGTTTCTCCGTTACCGTTGGATTGTTTATTCTCTGTGATTCTTTGCTGCCTGCCCTGATCCCTGCCTGTGTACTGGACTGTGTTTGCTTGCCGCCTGCCCTGATCTCTGCCTGTGACTTGACACCGTTTGTCTGCCGCCTGCCCTGACCATTGCCTGTCCCTGTTTATGTCTTTGCCTTTGCCCCTGTCTACTTTGGTGATTGTTCTAATAAAAGCTGCAAATGGATCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258726 lncRNA downstream 63195 4592579 ~ 4592891 (-) True G227986
TU258379 lncRNA downstream 82859 4572812 ~ 4573227 (-) True G227664
TU258470 lncRNA downstream 243479 4412389 ~ 4412607 (-) True G227752
TU258469 lncRNA downstream 244499 4411268 ~ 4411587 (-) True G227751
TU258431 lncRNA downstream 345586 4310249 ~ 4310500 (-) True G227715
TU258784 lncRNA upstream 54797 4712907 ~ 4713253 (-) True G228037
TU258757 lncRNA upstream 87631 4745741 ~ 4750012 (-) True G228012
TU258808 lncRNA upstream 118840 4776950 ~ 4777226 (-) True G228060
TU258809 lncRNA upstream 121461 4779571 ~ 4779782 (-) True G228061
TU258810 lncRNA upstream 122017 4780127 ~ 4780396 (-) True G228062
CI01000053_04642167_04642450.mRNA mRNA downstream 12921 4641841 ~ 4643165 (-) True CI01000053_04642167_04642450
CI01000053_04514278_04540909.mRNA mRNA downstream 115177 4513565 ~ 4540909 (-) True CI01000053_04514278_04540909
CI01000053_04494346_04508379.mRNA mRNA downstream 147446 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
CI01000053_04450920_04470110.mRNA mRNA downstream 185976 4450844 ~ 4470110 (-) True CI01000053_04450920_04470110
CI01000053_04423076_04430502.mRNA mRNA downstream 225584 4423076 ~ 4430502 (-) True CI01000053_04423076_04430502
CI01000053_04703670_04706744.mRNA mRNA upstream 45425 4703535 ~ 4707009 (-) True CI01000053_04703670_04706744
CI01000053_04834397_04836861.mRNA mRNA upstream 175956 4834066 ~ 4837227 (-) True CI01000053_04834397_04836861
CI01000053_05102710_05104285.mRNA mRNA upstream 442487 5100597 ~ 5104490 (-) False CI01000053_05102710_05104285
CI01000053_05221746_05223262.mRNA mRNA upstream 562640 5220750 ~ 5223262 (-) True CI01000053_05221746_05223262
CI01000053_05302453_05304313.mRNA mRNA upstream 644089 5302199 ~ 5304313 (-) True CI01000053_05302453_05304313
TU258305 other downstream 568346 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 1103115 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 1104108 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 1104108 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 1658818 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 1126373 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 1273482 5931592 ~ 5932241 (-) True G228750

Expression Profile