RNA id: TU258784


Basic Information

Item Value
RNA id TU258784
length 262
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G228037
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 4712907 ~ 4713253 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTACTTATCAGTCAGAATACTTTAGCAAAAGTGGTACAAAAATTAAAAAAAGATGGAACTGCAACCATCTCACAGAGACGTCCAGGTCGTCCACGGAAGTTAACACCTCGACAGGAGCATCTTCTGATGAGAAGGGTTGAAGAAAATCGGCATGCAAGTTCACTGCAGTTATCTAAAGAAGTAGAAAGCCAAACTGGGGTGACTATTTCCCGTGACACAATCTAGAGTTTGCCAGGGCCCATGCTGACAAAGATAAAGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258715 lncRNA downstream 54797 4656086 ~ 4658110 (-) False G227980
TU258716 lncRNA downstream 54797 4656086 ~ 4658110 (-) False G227980
TU258717 lncRNA downstream 54797 4656086 ~ 4658110 (-) False G227980
TU258718 lncRNA downstream 54797 4656086 ~ 4658110 (-) True G227980
TU258726 lncRNA downstream 120016 4592579 ~ 4592891 (-) True G227986
TU258757 lncRNA upstream 32488 4745741 ~ 4750012 (-) True G228012
TU258808 lncRNA upstream 63697 4776950 ~ 4777226 (-) True G228060
TU258809 lncRNA upstream 66318 4779571 ~ 4779782 (-) True G228061
TU258810 lncRNA upstream 66874 4780127 ~ 4780396 (-) True G228062
TU258855 lncRNA upstream 142895 4856148 ~ 4856575 (-) True G228104
CI01000053_04703670_04706744.mRNA mRNA downstream 5898 4703535 ~ 4707009 (-) True CI01000053_04703670_04706744
CI01000053_04642167_04642450.mRNA mRNA downstream 69742 4641841 ~ 4643165 (-) True CI01000053_04642167_04642450
CI01000053_04514278_04540909.mRNA mRNA downstream 171998 4513565 ~ 4540909 (-) True CI01000053_04514278_04540909
CI01000053_04494346_04508379.mRNA mRNA downstream 204267 4494322 ~ 4508640 (-) True CI01000053_04494346_04508379
CI01000053_04450920_04470110.mRNA mRNA downstream 242797 4450844 ~ 4470110 (-) True CI01000053_04450920_04470110
CI01000053_04834397_04836861.mRNA mRNA upstream 120813 4834066 ~ 4837227 (-) True CI01000053_04834397_04836861
CI01000053_05102710_05104285.mRNA mRNA upstream 387344 5100597 ~ 5104490 (-) False CI01000053_05102710_05104285
CI01000053_05221746_05223262.mRNA mRNA upstream 507497 5220750 ~ 5223262 (-) True CI01000053_05221746_05223262
CI01000053_05302453_05304313.mRNA mRNA upstream 588946 5302199 ~ 5304313 (-) True CI01000053_05302453_05304313
CI01000053_05308075_05312795.mRNA mRNA upstream 592981 5306234 ~ 5312795 (-) True CI01000053_05308075_05312795
TU258305 other downstream 625167 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 1159936 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 1160929 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 1160929 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 1715639 2996717 ~ 2997268 (-) True G226963
TU259481 other upstream 1071230 5784483 ~ 5787690 (-) True G228651
TU259584 other upstream 1218339 5931592 ~ 5932241 (-) True G228750

Expression Profile