XLOC_036608 (si:ch211-218o21.4)


Basic Information

Item Value
gene id XLOC_036608
gene name si:ch211-218o21.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 37046010 ~ 37056622 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071491
cttcgaaaagcctccTTTTCCCCCactctatccgcttgttaagtgtgacgtcatgcgaagcggcttccgggtccaagcgctctattcaactgaatgcggagactcatgaaatggtaataataaacgtttacaaagcgatttaatgctttcaaaaatcacgatcgcagtatatatgtccatgcctaatatccaatggccagaaagtgattaattttttttataaattgttacattttgttgtatttgttatgcagcaagcccagagattgttgtgtacactatgattttatataaaattaactttaatgtgtgataggaataaaacgtgatcataaacgaatgatttctccactcaaatgaatggcggcttacgtcacaaacacgtcaccacttaacaagcggatagaaacAACTAAAAcctaagcaaaaaacaaacaaacgtgtATGTTTTGTTGAAATATTGGGTACAAAACATTGCTCCTCAGTACCATCAGCCagggtttccagctttcttcaaaatatcttattttgtgttcaataacaGAATAAAGATAAGAAACACGAGAAGAGCAAGTGCTGATAAAACTTtaaatttggggtgaactatccctttaatgtgaaGAAAATGTGGGGCTAGGATTGGAAGCCGTTTGATTTCTCGCACGCTTACTGCCCCCAAGCGGTGACTAAGTGAAATGCGATACAGCACCTTTCTCAGGTGTCCACCGCCGTGTTGAGAGGTAAACAGATATCTGACTCATACTCACGCCGCTGCTCAGAAGAGACCTCGCTCATGGAGCCCTGACACACTTTCGTTTCCCAGCATGCAGCAGGAGCTTTGGCTGAGGGCCCTTCCTGATACCTGCGTGTGCGATGAGATCAGCCGCTGCACAATCACTCCCGATAAGACCAACCGAGCAAGAACTGAAAAATGCCATATCCAACAGCATCGCCGGACACAACCACGTCTCCAGCAGACCAGCACAGCCTCGAGCCAAGTCCACCTCAGACACAGTTCATTGCGGTTCTTTGCATCATCATGGCCATAATCGAGATAAATGTGATACTGCCGAGGGTCCCTGGAACCTGAACAACCCAGTGAAAGCCTCGAGGAGCCACCAGGAGCTTCACAAAGAGCTGTTACTGGCCCACAGAAAGCGGGACAGAGGGCTGGTGGTGTGTGCTAAGCCAGAGCTTCAGATGGTCCTGGAGAGGAGGAAGAGAGAGAAGACGCAGAAGGAAGAGGGCGAGCAGAGCAGGAGTCCTCTGGAGCAGGTGCTTCTCCAACGCCAGCAGAAGCATCAGGAGATGATGAAGGAGAAGGAAGAGGAGCAGAAGGTACGCGAGGAGGTTCAGCTTTTGGAGTTTGTGCGAGTGCGGCAGAACTTGAAGAAAGTCCACACGGCTCTACAGAAGAACATTCACTCCTGAAGCAGATCATCTGACTAAAGCAAACTTTATTTGGCCATCCAGTTTCATTGTGAAATAAAGCACACGGTGATGCGTTGAAACAATCCTGTTATTAAttcttttcatacattttatcCGGTTGAACATCATGTTAATAGTCCATTTTAGACGTTGTTCTAATGATAAGTAACTTTGCAACTACCTGTCAAATAACTCTCATTAGAGGTTTACACCAAAAAAAAGGTTCCATACAGTTTCTTCATGCTGTCCCATCTCAAATCGGTtacttaaaattatttgttttttacaatttaagaggttgaacctaaaacaattaagttgttccgccaaaaaaactttaaaaaattatgttattttaactcattttaggtaagataatattaataatattaatatgctgTAGAATATTTGCAAACTATAAATTTAAGGTTAGTGAAATAAGCTGACGCATAGttgcaaagttacttatagtCAGGAGAGTGTCTGTTGTGGATCTATTATGATATGAAGTATAGCAGatatttaaaggattagttcacctcCCATCCCCCCAAAACAGTCAATTTCACCCCCTCATGCTGAACCAccgaagtcacatggaatgttttgacaatatttttggtttctttttctggactttgattGTCTTTTAGtagttgctgtctatggaggatgagggagctctctcaTTTCACCTAAACTATGTTTATTCTTGtactgaagatgaatgaaggtctcagatTTTGGAACCACATgggggtgagtaattaataacctAATAATAACTCATCTGGTGACAAGTAGTTGCAGACTTGCTTGCTGTTAGTAGATTGTCTAAAGTGTTCAATAATAAAGTgttacattttattctgtcaagTTGACTTTTTATTTATGTTCTGCAGCTGTATCATAACGTCATTcccattaaacatttttatttgatgccGTTCTGTTATtagaatgactaaatgtaaatatttaggcTGGTTTGCCTTCGAACTGAATTTTTCTGTTGACTGATACAAGTATATTGTGACACCAGTTTGTAACAGAAAGAATGTgcggttaaataaaaaaacaaaaccatgtAATATTTGACTATTGAGTCATGATAGACATGACCAACTGCATTATGCTGC
>TCONS_00071492
ACTAAAAcctaagcaaaaaacaaacaaacgtgtATGTTTTGTTGAAATATTGGGTACAAAACATTGCTCCTCAGTACCATCAGCCagggtttccagctttcttcaaaatatcttattttgtgttcaataacaGAATAAAGATAAGAAACACGAGAAGAGCAAGTGCTGATAAAACTTtaaatttggggtgaactatccctttaatgtgaaGAAAATGTGGGGCTAGGATTGGAAGCCGTTTGATTTCTCGCACGCTTACTGCCCCCAAGCGGTGACTAAGTGAAATGCGATACAGCACCTTTCTCAGGTGTCCACCGCCGTGTTGAGAGGTAAACAGATATCTGACTCATACTCACGCCGCTGCTCAGAAGAGACCTCGCTCATGGAGCCCTGACACACTTTCGTTTCCCAGCATGCAGCAGGAGCTTTGGCTGAGGGCCCTTCCTGATACCTGCGTGTGCGATGAGATCAGCCGCTGCACAATCACTCCCGATAAGACCAACCGAGCAAGAACTGAAAAATGCCATATCCAACAGCATCGCCGGACACAACCACGTCTCCAGCAGACCAGCACAGCCTCGAGCCAAGTCCACCTCAGACACAGTTCATTGCGGTTCTTTGCATCATCATGGCCATAATCGAGAAAATGCAGATAAATGTGATACTGCCGAGGGTCCCTGGAACCTGAACAACCCAGTGAAAGCCTCGAGGAGCCACCAGGAGCTTCACAAAGAGCTGTTACTGGCCCACAGAAAGCGGGACAGAGGGCTGGTGGTGTGTGCTAAGCCAGAGCTTCAGATGGTCCTGGAGAGGAGGAAGAGAGAGAAGACGCAGAAGGAAGAGGGCGAGCAGAGCAGGAGTCCTCTGGAGCAGGTGCTTCTCCAACGCCAGCAGAAGCATCAGGAGATGATGAAGGAGAAGGAAGAGGAGCAGAAGGTACGCGAGGAGGTTCAGCTTTTGGAGTTTGTGCGAGTGCGGCAGAACTTGAAGAAAGTCCACACGGCTCTACAGAAGAACATTCACTCCTGAAGCAGATCATCTGACTAAAGCAAACTTTATTTGGCCATCCAGTTTCATTGTGAAATAAAGCACACGGTGATGCGTTGAAACAATCCTGTTATTAAttcttttcatacattttatcCGGTTGAACATCATGTTAATAGTCCATTTTAGACGTTGTTCTAAT

Function

symbol description
si:ch211-218o21.4 Predicted to be involved in actin filament bundle assembly; actin filament polymerization; and regulation of actin cytoskeleton organization. Predicted to be active in neuron projection; stress fiber; and synapse. Orthologous to human FAM107A (family with sequence similarity 107 member A).

GO:

id name namespace
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030041 actin filament polymerization biological_process
GO:0001725 stress fiber cellular_component
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-178 Predicted to be involved in actin filament bundle assembly; actin filament polymerization; and regulation of actin cytoskeleton organization. Predicted to be active in neuron projection; stress fiber; and synapse. Orthologous to human FAM107A (family with sequence similarity 107 member A).

Ensembl:

ensembl_id ENSDARG00000079869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071491 False 2570 mRNA 0.40 5 37046010 37056622
TCONS_00071492 True 1189 mRNA 0.47 5 37046989 37056211

Neighbor

gene id symbol gene type direction distance location
XLOC_036607 renbp coding downstream 2110 37030974 ~ 37043900 (-)
XLOC_036604 NA coding downstream 62849 36732916 ~ 36983161 (-)
XLOC_036606 NA coding downstream 68004 36976998 ~ 36978006 (-)
XLOC_036605 NA coding downstream 247305 36794501 ~ 36798705 (-)
XLOC_036603 gpkow coding downstream 427937 36591791 ~ 36618073 (-)
XLOC_036609 zgc:162200 coding upstream 2277 37058899 ~ 37105226 (-)
XLOC_036610 rbm39b coding upstream 171989 37228611 ~ 37249991 (-)
XLOC_036611 rh50 coding upstream 202776 37259398 ~ 37263524 (-)
XLOC_036612 slc12a5b coding upstream 223910 37280532 ~ 37391372 (-)
XLOC_036613 eif2d coding upstream 390984 37447606 ~ 37461835 (-)
XLOC_036601 CU694380.2 non-coding downstream 504154 36528233 ~ 36541856 (-)
XLOC_036590 NA non-coding downstream 1265323 35766632 ~ 35780687 (-)
XLOC_036614 NA non-coding upstream 909526 37966148 ~ 37966860 (-)
XLOC_036622 NA non-coding upstream 1529431 38586053 ~ 38587434 (-)
XLOC_036624 CR628410.1 non-coding upstream 1567533 38624155 ~ 38631651 (-)
XLOC_036626 CR392001.2 non-coding upstream 1881668 38938290 ~ 38938960 (-)
XLOC_036628 NA non-coding upstream 2075177 39131799 ~ 39132638 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_01949114_01954209 NA coding CI01000146 null 1948955 ~ 1954660 (+)